Detail information of GWHGAAEX002721/evm.TU.scaffold_123.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338175042|ref|YP_004651852.1| | 6.00E-44 | hypothetical protein PUV_10480 [Parachlamydia acanthamoebae UV-7] |
| KOG | KOG1018 | 3.00E-89 | Cytosine deaminase FCY1 and related enzymes |
| nr | gi|695032730|ref|XP_009403923.1| | 1.82E-151 | PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9S7I0|TADA_ARATH | 3.00E-97 | tRNA(adenine(34)) deaminase, chloroplastic (Precursor) |
| trEMBL | tr|M0RJV2|M0RJV2_MUSAM | 2.00E-151 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P20270_001} |
| TAIR | AT1G68720_2 | 3.00E-89 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000121 | 1475313 | 1497642 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002721
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00383.22 | dCMP_cyt_deam_1 | 1213 | 1311 | 4.30E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0002100 | Biological Process | tRNA wobble adenosine to inosine editing |
| GO:0008251 | Molecular Function | tRNA-specific adenosine deaminase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.630 |
| SRR2545915 | Juvenile tuber | 20.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.530 |
| SRR5643514 | five period of Gastrodia elata | 15.150 | |
| SRR5643515 | five period of Gastrodia elata | 11.490 | |
| SRR5643524 | five period of Gastrodia elata | 14.420 | |
| SRR5643525 | five period of Gastrodia elata | 6.500 | |
| SRR5643528 | five period of Gastrodia elata | 4.780 | |
| SRR5643658 | five period of Gastrodia elata | 8.030 | |
| SRR5643659 | five period of Gastrodia elata | 13.170 | |
| SRR5643660 | five period of Gastrodia elata | 13.660 | |
| SRR5643661 | five period of Gastrodia elata | 13.980 | |
| SRR5643662 | five period of Gastrodia elata | 11.560 | |
| SRR5643663 | five period of Gastrodia elata | 12.000 | |
| SRR5643664 | five period of Gastrodia elata | 12.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.20 |
| Juven | Juvenile tuber | 31.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.15 | |
| Mother_Juven | Mother tuber of Juvenile | 16.00 |