Detail information of GWHGAAEX002722/evm.TU.scaffold_123.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|333910603|ref|YP_004484336.1|4.00E-14suppressor Mra1 family protein [Methanotorris igneus Kol 5]
KOGKOG30737.00E-94Protein required for 18S rRNA maturation and 40S ribosome biogenesis
nrgi|695066875|ref|XP_009380338.1|5.62E-122PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0RJV1|M0RJV1_MUSAM2.00E-122Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P20260_001}
TAIRAT3G570007.00E-94nucleolar essential protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012115113781526379+
Transcript Sequence

Network for GWHGAAEX002722

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03587.13EMG1642602.90E-69
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14568EMG1, NEP1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0008168Molecular Functionmethyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.530
SRR2545915Juvenile tuber16.260
SRP108465SRR5643513five period of Gastrodia elata25.810
SRR5643514five period of Gastrodia elata23.010
SRR5643515five period of Gastrodia elata23.610
SRR5643524five period of Gastrodia elata26.600
SRR5643525five period of Gastrodia elata23.820
SRR5643528five period of Gastrodia elata22.030
SRR5643658five period of Gastrodia elata20.740
SRR5643659five period of Gastrodia elata24.100
SRR5643660five period of Gastrodia elata22.930
SRR5643661five period of Gastrodia elata23.260
SRR5643662five period of Gastrodia elata23.530
SRR5643663five period of Gastrodia elata22.120
SRR5643664five period of Gastrodia elata21.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.740
SRR6049655Rhizomagastrodiae_C368-T10_good_113.250
SRR6049656Rhizomagastrodiae_C368-T07_good_122.970
SRR6049657Rhizomagastrodiae_C368-T07_good_123.980
SRR6049658Rhizomagastrodiae_C368-T04_good_124.920
SRR6049659Rhizomagastrodiae_C368-T04_good_128.920
SRR6049660Rhizomagastrodiae_C368-T01_good_123.870
SRR6049661Rhizomagastrodiae_C368-T04_good_126.450
SRR6049662Rhizomagastrodiae_C368-T01_good_124.030
SRR6049663Rhizomagastrodiae_C368-T01_good_122.670
SRR6049664Rhizomagastrodiae_C368-T10_good_126.330
SRR6049665Rhizomagastrodiae_C368-T10_good_126.330
SRP279888GastroGastrodia elata tuber 25.92
JuvenJuvenile tuber26.72
Mother_GastroMother tuber of Gastrodia elata 25.81
Mother_JuvenMother tuber of Juvenile 23.69