Detail information of GWHGAAEX002724/evm.TU.scaffold_123.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383455075|ref|YP_005369064.1| | 4.00E-40 | polynucleotide Adenyltransferase [Corallococcus coralloides DSM 2259] |
| KOG | KOG2245 | 0 | Poly(A) polymerase and related nucleotidyltransferases |
| nr | gi|695079668|ref|XP_009387260.1| | 0 | PREDICTED: poly(A) polymerase PAPalpha isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LMT2|PAPS1_ARATH | 0 | Nuclear poly(A) polymerase 1 {ECO:0000303|PubMed:18479511} |
| trEMBL | tr|M0U9P3|M0U9P3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP16340_001} |
| TAIR | AT1G17980 | 0 | poly(A) polymerase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000121 | 1642738 | 1655568 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002724
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04928.16 | PAP_central | 15 | 359 | 7.70E-109 |
| PF01909.22 | NTP_transf_2 | 81 | 164 | 1.20E-11 |
| PF04926.14 | PAP_RNA-bind | 362 | 420 | 6.40E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14376 | PAP | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0031123 | Biological Process | RNA 3'-end processing |
| GO:0043631 | Biological Process | RNA polyadenylation |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0004652 | Molecular Function | polynucleotide adenylyltransferase activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 71.150 |
| SRR2545915 | Juvenile tuber | 65.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.560 |
| SRR5643514 | five period of Gastrodia elata | 62.510 | |
| SRR5643515 | five period of Gastrodia elata | 46.990 | |
| SRR5643524 | five period of Gastrodia elata | 54.980 | |
| SRR5643525 | five period of Gastrodia elata | 42.290 | |
| SRR5643528 | five period of Gastrodia elata | 34.320 | |
| SRR5643658 | five period of Gastrodia elata | 40.830 | |
| SRR5643659 | five period of Gastrodia elata | 46.530 | |
| SRR5643660 | five period of Gastrodia elata | 50.410 | |
| SRR5643661 | five period of Gastrodia elata | 43.970 | |
| SRR5643662 | five period of Gastrodia elata | 42.250 | |
| SRR5643663 | five period of Gastrodia elata | 45.100 | |
| SRR5643664 | five period of Gastrodia elata | 39.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 56.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 69.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 73.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 86.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 67.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 60.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 64.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 71.94 |
| Juven | Juvenile tuber | 125.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.55 | |
| Mother_Juven | Mother tuber of Juvenile | 79.76 |