Detail information of GWHGAAEX002729/evm.TU.scaffold_123.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|91777378|ref|YP_552586.1| | 5.00E-153 | putative oxalyl-CoA decarboxylase [Burkholderia xenovorans LB400] |
| KOG | KOG1185 | 0 | Thiamine pyrophosphate-requiring enzyme |
| nr | gi|743794401|ref|XP_010924161.1| | 0 | PREDICTED: 2-hydroxyacyl-CoA lyase-like [Elaeis guineensis] |
| Swissprot | tr|Q9LF46|HACL_ARATH | 0 | 2-hydroxyacyl-CoA lyase |
| trEMBL | tr|F6HSN5|F6HSN5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB57676.1} |
| TAIR | AT5G17380 | 0 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000121 | 1936013 | 1939140 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002729
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02776.17 | TPP_enzyme_N | 24 | 186 | 1.30E-39 |
| PF00205.21 | TPP_enzyme_M | 214 | 338 | 1.50E-28 |
| PF02775.20 | TPP_enzyme_C | 410 | 561 | 3.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12261 | HACL1 | Peroxisome | map04146 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030976 | Molecular Function | thiamine pyrophosphate binding |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 63.230 |
| SRR2545915 | Juvenile tuber | 98.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 208.830 |
| SRR5643514 | five period of Gastrodia elata | 171.420 | |
| SRR5643515 | five period of Gastrodia elata | 279.410 | |
| SRR5643524 | five period of Gastrodia elata | 224.270 | |
| SRR5643525 | five period of Gastrodia elata | 276.590 | |
| SRR5643528 | five period of Gastrodia elata | 419.450 | |
| SRR5643658 | five period of Gastrodia elata | 178.930 | |
| SRR5643659 | five period of Gastrodia elata | 423.060 | |
| SRR5643660 | five period of Gastrodia elata | 372.680 | |
| SRR5643661 | five period of Gastrodia elata | 405.610 | |
| SRR5643662 | five period of Gastrodia elata | 401.950 | |
| SRR5643663 | five period of Gastrodia elata | 350.520 | |
| SRR5643664 | five period of Gastrodia elata | 402.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 249.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 211.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 250.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 181.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 168.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 166.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 227.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 181.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 246.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 302.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 306.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 306.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 178.14 |
| Juven | Juvenile tuber | 230.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 267.09 | |
| Mother_Juven | Mother tuber of Juvenile | 231.14 |