Detail information of GWHGAAEX002730/evm.TU.scaffold_123.51


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|330813464|ref|YP_004357703.1|0ATP synthase subunit beta [Candidatus Pelagibacter sp. IMCC9063]
KOGKOG13500F0F1-type ATP synthase, beta subunit
nrgi|743794377|ref|XP_010924155.1|0PREDICTED: ATP synthase subunit beta, mitochondrial [Elaeis guineensis]
Swissprottr|P17614|ATPBM_NICPL0ATP synthase subunit beta, mitochondrial (Precursor)
trEMBLtr|K4BNR2|K4BNR2_SOLLC0ATP synthase subunit beta {ECO:0000256|RuleBase:RU003553}
TAIRHS45022950Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012119395901948025-
Transcript Sequence

Network for GWHGAAEX002730

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11421.7Synthase_beta1482.40E-08
PF02874.22ATP-synt_ab_N921581.00E-19
PF00006.24ATP-synt_ab2154365.10E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02133ATPeF1B, ATP5B, ATP2 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0006754Biological ProcessATP biosynthetic process
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0015986Biological ProcessATP synthesis coupled proton transport
GO:0046034Biological ProcessATP metabolic process
GO:0046933Molecular Functionproton-transporting ATP synthase activity, rotational mechanism
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
GO:0000275Cellular Componentmitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
GO:0045261Cellular Componentproton-transporting ATP synthase complex, catalytic core F(1)

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms93.440
SRR2545915Juvenile tuber138.180
SRP108465SRR5643513five period of Gastrodia elata284.870
SRR5643514five period of Gastrodia elata436.720
SRR5643515five period of Gastrodia elata301.110
SRR5643524five period of Gastrodia elata432.230
SRR5643525five period of Gastrodia elata184.940
SRR5643528five period of Gastrodia elata221.590
SRR5643658five period of Gastrodia elata142.290
SRR5643659five period of Gastrodia elata197.370
SRR5643660five period of Gastrodia elata179.050
SRR5643661five period of Gastrodia elata192.070
SRR5643662five period of Gastrodia elata184.500
SRR5643663five period of Gastrodia elata179.410
SRR5643664five period of Gastrodia elata153.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1313.910
SRR6049655Rhizomagastrodiae_C368-T10_good_1428.730
SRR6049656Rhizomagastrodiae_C368-T07_good_1381.520
SRR6049657Rhizomagastrodiae_C368-T07_good_1216.000
SRR6049658Rhizomagastrodiae_C368-T04_good_1256.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1203.560
SRR6049660Rhizomagastrodiae_C368-T01_good_1230.200
SRR6049661Rhizomagastrodiae_C368-T04_good_1248.380
SRR6049662Rhizomagastrodiae_C368-T01_good_1517.540
SRR6049663Rhizomagastrodiae_C368-T01_good_1385.810
SRR6049664Rhizomagastrodiae_C368-T10_good_1558.550
SRR6049665Rhizomagastrodiae_C368-T10_good_1558.550
SRP279888GastroGastrodia elata tuber 186.73
JuvenJuvenile tuber218.70
Mother_GastroMother tuber of Gastrodia elata 119.38
Mother_JuvenMother tuber of Juvenile 180.07