Detail information of GWHGAAEX002734/evm.TU.scaffold_123.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|511059153|ref|YP_008071038.1| | 2.00E-27 | hypothetical protein H729_01335 [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1] |
| nr | gi|743858083|ref|XP_010942268.1| | 6.21E-170 | PREDICTED: D-aminoacyl-tRNA deacylase isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9ZPQ3|GEK1_ARATH | 1.00E-160 | D-aminoacyl-tRNA deacylase |
| trEMBL | tr|B4FGA9|B4FGA9_MAIZE | 1.00E-166 | Uncharacterized protein {ECO:0000313|EMBL:ACF81152.1, ECO:0000313|EnsemblPlants:GRMZM2G106427_P02} |
| TAIR | AT2G03800 | 6.00E-160 | D-aminoacyl-tRNA deacylases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000121 | 2229813 | 2315452 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002734
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04414.11 | tRNA_deacylase | 70 | 317 | 3.30E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019478 | Biological Process | D-amino acid catabolic process |
| GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
| GO:0051499 | Molecular Function | D-aminoacyl-tRNA deacylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 68.940 |
| SRR2545915 | Juvenile tuber | 55.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.110 |
| SRR5643514 | five period of Gastrodia elata | 34.840 | |
| SRR5643515 | five period of Gastrodia elata | 29.080 | |
| SRR5643524 | five period of Gastrodia elata | 34.040 | |
| SRR5643525 | five period of Gastrodia elata | 50.110 | |
| SRR5643528 | five period of Gastrodia elata | 46.250 | |
| SRR5643658 | five period of Gastrodia elata | 50.980 | |
| SRR5643659 | five period of Gastrodia elata | 37.040 | |
| SRR5643660 | five period of Gastrodia elata | 40.850 | |
| SRR5643661 | five period of Gastrodia elata | 38.950 | |
| SRR5643662 | five period of Gastrodia elata | 36.820 | |
| SRR5643663 | five period of Gastrodia elata | 38.550 | |
| SRR5643664 | five period of Gastrodia elata | 41.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 59.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 61.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 53.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 68.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 73.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 77.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 63.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 69.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.20 |
| Juven | Juvenile tuber | 54.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.97 | |
| Mother_Juven | Mother tuber of Juvenile | 49.12 |