Detail information of GWHGAAEX002735/evm.TU.scaffold_123.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0443 | 0 | Actin regulatory proteins (gelsolin/villin family) |
| nr | gi|743766901|ref|XP_010913698.1| | 0 | PREDICTED: villin-4-like [Elaeis guineensis] |
| Swissprot | tr|O65570|VILI4_ARATH | 0 | Villin-4 {ECO:0000303|PubMed:10631247} |
| trEMBL | tr|M0U2Q1|M0U2Q1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P22920_001} |
| TAIR | AT4G30160 | 0 | villin 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000121 | 2325553 | 2362606 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002735
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00626.21 | Gelsolin | 29 | 111 | 3.90E-16 |
| PF00626.21 | Gelsolin | 152 | 219 | 1.00E-09 |
| PF00626.21 | Gelsolin | 266 | 338 | 2.70E-12 |
| PF02209.18 | VHP | 925 | 960 | 1.40E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05768 | GSN | Regulation of actin cytoskeleton | map04810 |
| Fc gamma R-mediated phagocytosis | map04666 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007010 | Biological Process | cytoskeleton organization |
| GO:0003779 | Molecular Function | actin binding |
| GO:0051015 | Molecular Function | actin filament binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.880 |
| SRR2545915 | Juvenile tuber | 53.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.360 |
| SRR5643514 | five period of Gastrodia elata | 44.320 | |
| SRR5643515 | five period of Gastrodia elata | 40.970 | |
| SRR5643524 | five period of Gastrodia elata | 41.150 | |
| SRR5643525 | five period of Gastrodia elata | 73.560 | |
| SRR5643528 | five period of Gastrodia elata | 62.910 | |
| SRR5643658 | five period of Gastrodia elata | 74.440 | |
| SRR5643659 | five period of Gastrodia elata | 43.390 | |
| SRR5643660 | five period of Gastrodia elata | 44.020 | |
| SRR5643661 | five period of Gastrodia elata | 44.550 | |
| SRR5643662 | five period of Gastrodia elata | 45.350 | |
| SRR5643663 | five period of Gastrodia elata | 49.730 | |
| SRR5643664 | five period of Gastrodia elata | 49.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 55.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 64.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 65.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 58.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 57.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 58.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 58.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 56.19 |
| Juven | Juvenile tuber | 53.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.76 | |
| Mother_Juven | Mother tuber of Juvenile | 91.87 |