Detail information of GWHGAAEX002740/evm.TU.scaffold_123.68_evm.TU.scaffold_123.69
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
COG | gi|212639808|ref|YP_002316328.1| | 1.00E-15 | ATP-dependent Clp protease-like protein [Anoxybacillus flavithermus WK1] |
KOG | KOG1051 | 0 | Chaperone HSP104 and related ATP-dependent Clp proteases |
nr | gi|672115056|ref|XP_008779572.1| | 0 | PREDICTED: uncharacterized protein LOC103699317 [Phoenix dactylifera] |
Swissprot | tr|P42730|CLPB1_ARATH | 5.00E-12 | Chaperone protein ClpB1 |
trEMBL | tr|M0UA69|M0UA69_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18100_001} |
TAIR | AT5G57710 | 0 | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
Scaffold | Start | End | Strand |
---|---|---|---|
GWHAAEX00000121 | 2861735 | 2865301 | + |
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Transcript Sequence | |||
Network for GWHGAAEX002740
Network category | Network | Top300 PCC genelist |
---|---|---|
Coexpression Positive | Network | Top300 PCC genelist |
Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
Module ID | Function Annotation |
---|---|
Module4 |
Protein Structure
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF02861.19 | Clp_N | 25 | 54 | 0.37 |
PF02861.19 | Clp_N | 132 | 165 | 0.042 |
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Protein Sequence |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | pathway | mapID |
---|---|---|---|
-- | -- | -- | -- |
Gene Ontology
GO term | Ontology | Name |
---|---|---|
GO:0019538 | Biological Process | protein metabolic process |
Expression pattern
SRP | Sample | Description | FPKM |
---|---|---|---|
SRP064423 | SRR2545914 | vegetative propagation corms | 11.870 |
SRR2545915 | Juvenile tuber | 5.110 | |
SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.430 |
SRR5643514 | five period of Gastrodia elata | 19.630 | |
SRR5643515 | five period of Gastrodia elata | 44.710 | |
SRR5643524 | five period of Gastrodia elata | 23.590 | |
SRR5643525 | five period of Gastrodia elata | 84.380 | |
SRR5643528 | five period of Gastrodia elata | 71.830 | |
SRR5643658 | five period of Gastrodia elata | 40.780 | |
SRR5643659 | five period of Gastrodia elata | 42.220 | |
SRR5643660 | five period of Gastrodia elata | 31.350 | |
SRR5643661 | five period of Gastrodia elata | 45.970 | |
SRR5643662 | five period of Gastrodia elata | 51.260 | |
SRR5643663 | five period of Gastrodia elata | 44.770 | |
SRR5643664 | five period of Gastrodia elata | 78.760 | |
SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.750 |
SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.930 | |
SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.980 | |
SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.430 | |
SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.380 | |
SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.300 | |
SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.550 | |
SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.730 | |
SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.170 | |
SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.250 | |
SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.260 | |
SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.260 | |
SRP279888 | Gastro | Gastrodia elata tuber | 26.25 |
Juven | Juvenile tuber | 40.74 | |
Mother_Gastro | Mother tuber of Gastrodia elata | 129.55 | |
Mother_Juven | Mother tuber of Juvenile | 101.74 |