Detail information of GWHGAAEX002740/evm.TU.scaffold_123.68_evm.TU.scaffold_123.69


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|212639808|ref|YP_002316328.1|1.00E-15ATP-dependent Clp protease-like protein [Anoxybacillus flavithermus WK1]
KOGKOG10510Chaperone HSP104 and related ATP-dependent Clp proteases
nrgi|672115056|ref|XP_008779572.1|0PREDICTED: uncharacterized protein LOC103699317 [Phoenix dactylifera]
Swissprottr|P42730|CLPB1_ARATH5.00E-12Chaperone protein ClpB1
trEMBLtr|M0UA69|M0UA69_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP18100_001}
TAIRAT5G577100Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012128617352865301+
Transcript Sequence

Network for GWHGAAEX002740

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02861.19Clp_N25540.37
PF02861.19Clp_N1321650.042
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0019538Biological Processprotein metabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.870
SRR2545915Juvenile tuber5.110
SRP108465SRR5643513five period of Gastrodia elata37.430
SRR5643514five period of Gastrodia elata19.630
SRR5643515five period of Gastrodia elata44.710
SRR5643524five period of Gastrodia elata23.590
SRR5643525five period of Gastrodia elata84.380
SRR5643528five period of Gastrodia elata71.830
SRR5643658five period of Gastrodia elata40.780
SRR5643659five period of Gastrodia elata42.220
SRR5643660five period of Gastrodia elata31.350
SRR5643661five period of Gastrodia elata45.970
SRR5643662five period of Gastrodia elata51.260
SRR5643663five period of Gastrodia elata44.770
SRR5643664five period of Gastrodia elata78.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.750
SRR6049655Rhizomagastrodiae_C368-T10_good_128.930
SRR6049656Rhizomagastrodiae_C368-T07_good_130.980
SRR6049657Rhizomagastrodiae_C368-T07_good_127.430
SRR6049658Rhizomagastrodiae_C368-T04_good_123.380
SRR6049659Rhizomagastrodiae_C368-T04_good_127.300
SRR6049660Rhizomagastrodiae_C368-T01_good_140.550
SRR6049661Rhizomagastrodiae_C368-T04_good_125.730
SRR6049662Rhizomagastrodiae_C368-T01_good_130.170
SRR6049663Rhizomagastrodiae_C368-T01_good_141.250
SRR6049664Rhizomagastrodiae_C368-T10_good_138.260
SRR6049665Rhizomagastrodiae_C368-T10_good_138.260
SRP279888GastroGastrodia elata tuber 26.25
JuvenJuvenile tuber40.74
Mother_GastroMother tuber of Gastrodia elata 129.55
Mother_JuvenMother tuber of Juvenile 101.74