Gene detail

Detail information of GWHGAAEX002741/evm.TU.scaffold_123.73

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2203	GTP-binding protein
nr	gi\|743755326\|ref\|XP_010904950.1\|	PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Elaeis guineensis]
Swissprot	tr\|Q0JLS6\|RHD3_ORYSJ	Protein ROOT HAIR DEFECTIVE 3 {ECO:0000255\|HAMAP-Rule:MF_03109}
trEMBL	tr\|K3YPZ2\|K3YPZ2_SETIT	Protein ROOT HAIR DEFECTIVE 3 homolog {ECO:0000256\|HAMAP-Rule:MF_03109}
TAIR	AT3G13870	Root hair defective 3 GTP-binding protein (RHD3)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000121	3011064	3044493	-

Transcript Sequence
>GWHTAAEX002741 ATGGAAGAAGGAGATTGGGATAAATACAAAGATGAGCCAGCTGTGAAGACGCAGCGCCAGTGCTCCGCCTTTGCTTCTCCTCGCCGACGCAGCTTCCCCAGACGCAGCGCCGGTGCTCCGCCTTCTCTTCGCCTCGCTTCTCCTCGCCTCGCCGATTTCGTCAACGCAGATATGGAAAACAATAGTTGTTCTACCCAGCTAATTCATGGGGATGGTGTATTCAACGTTCTTGGAATGGAGAGTTTCATGAAGACTGCAAAAGTTGGTGAATGTGGACTCTCATATGCTGTAGTGTCTATTATGGGCCCACAAAGCAGTGGGAAAAGCACTCTCTTGAATAATCTTTTCCATACCAGTTTCAGAGAAATGGATGCATTTAAGGGGAGGCAATCGCCAAAATTATTTCTTTCACCATCTATATTTCTATTTCGTTTCAGATCTCAAACTACTAAAGGAATTTGGCTGGAAAGGTGCAGGGATATTGAACCTTGTACCATCGTTATGGATTTGGAGGGTTCTGATGGAAGAGAACGAGGAGAGGATGATACTGCATTTGAGAAGCAGAGTGCTCTTTTTGCTTTAGCAGTTTCAGATATAGTATTGATAAATATGTGGTGTCATGATATTGGACGGGAGCATGCGGCAAACAAACCTCTTTTAAAAACAGTTTTCCAAGTCATGATGCGGTTGTTTAGTCCCCGTAAAACAACTTTGCTCTTTGTCATTCGTGACAAGACTAAGACCCCTCTTGAAAACTTGGAACCTATATTGAGGGAAGATATTCAGAAGATTTGGGATTCTGTTCGCAAGCCTCATGCTCATAAAGATACTCCTCTGAGCGATTTTTTTAATGTAGAAGTTGTTGCCCTTTCAAGTTTTGAAGAAAAAGAAGAGCAGTTCAAGGAGCAGGCTCAAAACCTAAGACAAAGATTTTTTCATTCAATTGCTCCTGGTGGGCTTGCTGGAGATAGACGTGGTGTTGTTCCTGCATCAGGATTTTCTTTTAGTGCAGAACAAATTTGGAAAGTTATAAAGGAGAATAAGGACCTTGACTTACCCGCTCATAAGGTTATGGTGGCTACTGTTCGCTGTGAAGAAATTGCTAATGAGAAATTTGCCTCTTTTTCTGATAATGAGGAGTGGCACAGTCTTGAGGAGGCTGTACAAAATGGTGTTGCTCCAGGTTTTGGTAAGCAACTCAGCTCTATGTTGGAGACTTGTTTAAACGGTTATGACATGGAAGCTGCATATTTTGATGATAGTGTCAGAACCTCAAAGAGACAGCAATTGGAATCGAAGCTTTTGCAGTTTGTTCAGCCTACTTACCATTTGGTGTTGGGGCACCTTAGATCCAGAACTTTAGAAGATTTTAAAGATAGATTCGAGAAGGCTCTGAAAAATGGTGATGGATTTGCGGCTGCTGCTCTTGATTGCACCCAGTCTTTTATGTCCATATTCATTGAAGGCTGCAAAGATGCAGCCATTGAACAAGCAAATTGGGACTCCTCAAAAGCACGCGATAAGCTTCGGCGTGATATCGATGCTCACATTGCTTCTGTTCGCACGACAAAACTATCTGAGCTCACATCATTGTATGAGGAAAAGCTCAACAAGGCTTTGTCTGAGCCTGTGGAAGCTCTTCTTGATGCTGCTAGTGATGTTACGTGGCCTGCAATCAGAAAACTTCTTCAACGGGAGACAAAGGCAGCTGTATCTGCTTTTGAGTCCGCCCTCTCTTCATTTGATATTGATCAAGAAACTGTGGAAAAATTGGTGGAAAAACTAGAAGAATATGCTAGAAGCGTTGTTGAATCCAAGGCAAGGGAAGAAGCTGGGAGGGTCTTGATGCATATGAAGGACAGGTTTTCATCTTTATTTAACCGTGACTCTGATTCAATGCCAAGAATGTGGACTGGAAAGGAAGACATTAAAGCAATCACCAAAGTGGCTCGTGTAGCATCATTGAAGTTACTTTCTGTTATGGTTGCAATTCGTTTAGATGAGGACAAGGATAATGTTGAGAATACCCTTCAACTTACCTTGGTGGATGCTCCTAGCAATTCAACTTTGACTAGGAGCATTCAGTCATTGGATCCATTGGCTTCCAGTTCATGGGAAGATGTTCCATCAACAAGGACATTAATTACGCCAGTTCAGTGCAAGTCTTTATGGAGGCAGTTTAAGTCGGAAACAGAGTACACTGTGACACAGGCCATTGCTGCTCAGGCATCCAACAGGAGGAACAACAACTGGCTGCCTCCTCCGTGGGCCATTGCCGCTATGCTCATATTGGGTTTCAACGAGTTTATGACACTTCTAAGAAATCCTTTCTACCTCGGCCTCCTCTTTATCGCTTTCCTTCTGTGCAAGGCCCTCTGGGTCCAGCTTGACATCTCCACCGCATTTCAAAATGGAGTTCTTCCTGGGCTCCTTTCGTTATCTGCTAACTTTCTTCCTACGGTGATGAACTTGCTGAAGAAATTAGCGGATGAGGGGCAGAGGCCTCCAGCCCCAGATTCCCGAAGGAACCCTGAGCTTGGATCTAGGATTATTACGAACGGTATAAGCAGTAACTCAACATCGTCAGCCGGGTCGTCTAATGTAACTTCTTCCGACAGTGGGGTGGAGTTTTCGAGCCCGGTAAAGCAGCGGATGGACGAACATAGTAGCTAA

Network for GWHGAAEX002741

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05879.11	RHD3	101	841	5.40E-283

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.840
SRP064423	SRR2545915	Juvenile tuber	18.180
SRP108465	SRR5643513	five period of Gastrodia elata	15.260
	SRR5643514	five period of Gastrodia elata	13.060
	SRR5643515	five period of Gastrodia elata	13.940
	SRR5643524	five period of Gastrodia elata	13.590
	SRR5643525	five period of Gastrodia elata	16.930
	SRR5643528	five period of Gastrodia elata	13.300
	SRR5643658	five period of Gastrodia elata	15.840
	SRR5643659	five period of Gastrodia elata	18.920
	SRR5643660	five period of Gastrodia elata	23.000
	SRR5643661	five period of Gastrodia elata	20.550
	SRR5643662	five period of Gastrodia elata	26.450
	SRR5643663	five period of Gastrodia elata	25.350
	SRR5643664	five period of Gastrodia elata	28.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.610
SRP279888	Gastro	Gastrodia elata tuber	24.13
	Juven	Juvenile tuber	27.79
	Mother_Gastro	Mother tuber of Gastrodia elata	12.85
	Mother_Juven	Mother tuber of Juvenile	22.91