Detail information of GWHGAAEX002743/evm.TU.scaffold_123.75


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG22030GTP-binding protein
nrgi|743755326|ref|XP_010904950.1|0PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Elaeis guineensis]
Swissprottr|Q0JLS6|RHD3_ORYSJ0Protein ROOT HAIR DEFECTIVE 3 {ECO:0000255|HAMAP-Rule:MF_03109}
trEMBLtr|A0A072TLJ4|A0A072TLJ4_MEDTR0Protein ROOT HAIR DEFECTIVE 3 homolog {ECO:0000256|HAMAP-Rule:MF_03109}
TAIRAT3G138700Root hair defective 3 GTP-binding protein (RHD3)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012131261033145267+
Transcript Sequence

Network for GWHGAAEX002743

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05879.11RHD3443351.10E-152
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms61.580
SRR2545915Juvenile tuber90.160
SRP108465SRR5643513five period of Gastrodia elata37.300
SRR5643514five period of Gastrodia elata30.230
SRR5643515five period of Gastrodia elata30.010
SRR5643524five period of Gastrodia elata29.770
SRR5643525five period of Gastrodia elata47.450
SRR5643528five period of Gastrodia elata28.570
SRR5643658five period of Gastrodia elata44.410
SRR5643659five period of Gastrodia elata66.170
SRR5643660five period of Gastrodia elata82.540
SRR5643661five period of Gastrodia elata70.410
SRR5643662five period of Gastrodia elata105.660
SRR5643663five period of Gastrodia elata106.230
SRR5643664five period of Gastrodia elata134.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.430
SRR6049655Rhizomagastrodiae_C368-T10_good_147.630
SRR6049656Rhizomagastrodiae_C368-T07_good_150.030
SRR6049657Rhizomagastrodiae_C368-T07_good_189.570
SRR6049658Rhizomagastrodiae_C368-T04_good_182.270
SRR6049659Rhizomagastrodiae_C368-T04_good_1105.010
SRR6049660Rhizomagastrodiae_C368-T01_good_170.310
SRR6049661Rhizomagastrodiae_C368-T04_good_177.290
SRR6049662Rhizomagastrodiae_C368-T01_good_141.360
SRR6049663Rhizomagastrodiae_C368-T01_good_150.750
SRR6049664Rhizomagastrodiae_C368-T10_good_134.420
SRR6049665Rhizomagastrodiae_C368-T10_good_134.420
SRP279888GastroGastrodia elata tuber 84.37
JuvenJuvenile tuber84.18
Mother_GastroMother tuber of Gastrodia elata 22.19
Mother_JuvenMother tuber of Juvenile 56.74