Detail information of GWHGAAEX002744/evm.TU.scaffold_124.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19900Poly(A)-specific exoribonuclease PARN
nrgi|743859786|ref|XP_010942841.1|0PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Elaeis guineensis]
Swissprottr|Q9LG26|PARN_ARATH0Poly(A)-specific ribonuclease PARN
trEMBLtr|M0SDJ0|M0SDJ0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P10730_001}
TAIRAT1G558700Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001314460654334+
Transcript Sequence

Network for GWHGAAEX002744

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.19CAF1484715.60E-86
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01148PARN, PNLDC1 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.920
SRR2545915Juvenile tuber8.400
SRP108465SRR5643513five period of Gastrodia elata6.440
SRR5643514five period of Gastrodia elata5.370
SRR5643515five period of Gastrodia elata4.290
SRR5643524five period of Gastrodia elata5.910
SRR5643525five period of Gastrodia elata4.370
SRR5643528five period of Gastrodia elata2.980
SRR5643658five period of Gastrodia elata2.030
SRR5643659five period of Gastrodia elata9.130
SRR5643660five period of Gastrodia elata10.000
SRR5643661five period of Gastrodia elata8.090
SRR5643662five period of Gastrodia elata9.880
SRR5643663five period of Gastrodia elata8.800
SRR5643664five period of Gastrodia elata10.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.630
SRR6049655Rhizomagastrodiae_C368-T10_good_111.770
SRR6049656Rhizomagastrodiae_C368-T07_good_19.880
SRR6049657Rhizomagastrodiae_C368-T07_good_111.540
SRR6049658Rhizomagastrodiae_C368-T04_good_111.550
SRR6049659Rhizomagastrodiae_C368-T04_good_112.370
SRR6049660Rhizomagastrodiae_C368-T01_good_112.040
SRR6049661Rhizomagastrodiae_C368-T04_good_112.780
SRR6049662Rhizomagastrodiae_C368-T01_good_110.960
SRR6049663Rhizomagastrodiae_C368-T01_good_110.360
SRR6049664Rhizomagastrodiae_C368-T10_good_17.690
SRR6049665Rhizomagastrodiae_C368-T10_good_17.690
SRP279888GastroGastrodia elata tuber 12.79
JuvenJuvenile tuber10.72
Mother_GastroMother tuber of Gastrodia elata 5.99
Mother_JuvenMother tuber of Juvenile 6.19