Gene detail

Detail information of GWHGAAEX002751/evm.TU.scaffold_124.12

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|337281471\|ref\|YP_004620943.1\|	2.00E-06	glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
KOG	KOG0118	1.00E-82	FOG: RRM domain
nr	gi\|743807440\|ref\|XP_010928098.1\|	7.49E-147	PREDICTED: RNA-binding protein cabeza-like [Elaeis guineensis]
Swissprot	tr\|Q9LIN3\|RZ1A_ARATH	3.00E-08	Glycine-rich RNA-binding protein RZ1A {ECO:0000305}
trEMBL	tr\|M0U849\|M0U849_MUSAM	7.00E-124	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP10900_001}
TAIR	AT5G55670	1.00E-82	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000131	273437	288094	+

Transcript Sequence
>GWHTAAEX002751 AAAATTTTCCCACGTATTATTAGTTCAGCCTTGCGATCTATTGAAACTACGGTTCTCTTTTTTATTTCCGGCTTCCCCTCTGTACTCATCTTTTTACTCCTTGACTTTCAACAGCTTAAGCCATTGCAGATCTCTCCTAGAAGAGGAGTTTTAGGGTTTTACCCTGTGTCTTCCCTCTGCAAACCCTAGCTGGCAGATCTTCCTACATGGAGCACGGCACCGATGGGGAACGATCCAGTTTTCATGGCAACGAAGTGATCTCAGCTGTTCAGGAAGAGGATCAGTTTTACGGCGACGACGATGATTACGACGATTTATACAACGACGTCAACGTTGGCGATGGCTTCTACCAGTCTTCCGTCCATCGAAACGACGAATACGATGGCGATTTTTCAAAGGATTCTGATACCAAGAAAGATCCGCCGCCGGCGCCGGCGCCGGATCCTGAGCCAGCGCCGGATCCTGAGCCAGCGCCGGCATCTTCTCCTCCTCTTTCGCTTCATCAGCCACGAATTCTTCTTGTAAAGGATAGTGCTCCGGTCATAACTGGAGAACCGGGGGTAGAAAGGCCTTTCAACAGACCCGCCCCATCTATCCCGTCCGAAATTGGGATTCTGGCGAGGCCTCCCGCATCATCAGGTGGAGTCAAGGCTGATCCAGTGCAGTCTTCTGATAGGCCTAATGACATTCAGGGACATGCTGGAGGAAATAACTTTGGGAATAATGAATTTCAGAAGTTGGGAAGTGGCAGCAATCCTATCCCCGTTGTTTCTGCAAGGGTTGGAGTTGCTGGAGCTGGAGCTCCTGTTTTTTCCGGAGGAAATATGAATGGTGGAGGAGGAGGCGGATCCACTACTCTTTTTGTTGGGGATCTTCAGTGGTGGACTACTGACACCGAGCTTGAGGGCGAGCTTTGCAAGTATGGTGCTGTGAAAGAAGTGAAGTTCTTTGATGAGAAAGCTAGTGGGAAATCGAAAGGATATGCTCAGGTGGACTTTTATGATCCGACAGCTGCATTTGCTTGCAAGGAGGGTATGAATGGTCATATCTTTAATGGAAAACCGTGTGTCGTGGCATTTTCTTCGCCTCACGGTGTTAGACGGCTTGGAGATGGTCAGATGGGCAGAAACCAGCAAAACATGCCCCAAGCCCAACCACAGTCTGCATTCATGCAAAAGGGTAGAGGAGGAGGAGGGGGAGGTGGAGGAGTTGGAGGGGGAGGAGGAGGTCATATGGGAGGGAATTTTGGAAGAGGGGGTGGTGGAAATTGGGGAAGAGGTGGGATTGGAAATAGAGGCCCAATGATGAATATGAGAAACCGTGTTGGGCCTGTTGGCGGTAGAGGTATCATGGGAAATGGTGGAATGGTGCCACCACCACCTGCGGTGTTACACCCAGGTGCTATGTTGGGGCATGGGTTTGATCCTACTGGCTATGGTGCACCGATGGGCAGAATGGGTGCTGGGTTTGGAGGATTTCATGCTGGTCCTGGTGCTGGTGCATTCCCCGGAATGTTACCTTCTTTTCCTCCTGTAGTGGCACCACATGTTAACCCGGCTTTCTTTGGAAGAGGGATGGCTACAGGTGGCATGGGAATGTGGCCTGATCCTAGTATGAGTGGTTGGGGTGCTGAAGAACAGTCTAGTTATGGGGATGATGCAGTTTCAGACCAGCAGTATGGGGATGGGAACCATGGAAAGGAGAGAGGCTCTGATCGTGATTTGGTGGGGTCTTCTGATAGAAGGCAAATGACGGATAAAGATTTGGCACCTGGGTCGGAGTGGGCTGAGCGAAAACATAATGAGGAAAGGGATACAAGTCGGATACGGGATCGGGATTTAGATAGAGACAGACAGAGGGAAAGGGAGAGGGACAGGGAGAGGGATAGAGAATGGGATCGAGAGAGGGAACGAGAAAGAGAGAGGGACAGGGATAGAGAAAGAGAGCGTGACAGGTATCATGATGATAGAGACAGGCATGTGGAACATTACAGGCATAGGGAACATGAACAAGAGCGAGATGATGAATGGGATAGAGGTCGATCATCTAAGGTTCGAAGCAACTCGCGAGAGATTGAGAATGTTAAAAAACGTCGACCATCTGAATGAGTGGGGCCCTTAGCAGTTTTCCTTGCTACATCTGCGGCAGCAGGATTACTTGTTTTTCTTCCTCTCCACCGAAGCTGTTTTTCTCAGCAGCTTATTATGATCTCAGCAAAAGGATTTCTTCTCCCTCCCACACTCTATATTACAACGCACCTTTCAATACTTTTACTGACTCTTAAAAAGTGCTTTTTATTGTTATTAATATTATGATTATTACTGTACCAATTACTTATTGTTGTAGACTGCCGTATATTCTTAGGCAAAAAAGAGAGAGATTTGTGTCTATAACATATGTTTTATTTAAGAACTGTAAAAGTGTGTGCTGCACACAATCTCTCCAGGATTGTGGATTTCGACCCCCCCTGCGGCAGACTCATCAAGCACTTGCCAGAGATTCCGTTCTTGTTTGAAGATGTCCTGTTTTGATGATTTTTTTTTTTATTGTATCTGTATTTTGCCTGATTCTTCTGTTATTGCTGCTGCGCTCCTGTTGTTCATATTTTTAATTTTATTTTCAGCGAAATTCGCTTTTTTGTTCTTGTTATCTTAGCATCTGTAATGTAAATAGACTTGTTAGGGGTATGGGGCTAAATTGTACATATGCTGGAGCTAAGCAGCTTTAGCAATTTGAGTGTAAATAATATCCTTTTAAGTCAATCAAATCTTGC

Network for GWHGAAEX002751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	218	286	7.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14398	CPSF6_7	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.620
SRP064423	SRR2545915	Juvenile tuber	32.570
SRP108465	SRR5643513	five period of Gastrodia elata	38.840
	SRR5643514	five period of Gastrodia elata	34.990
	SRR5643515	five period of Gastrodia elata	40.370
	SRR5643524	five period of Gastrodia elata	38.470
	SRR5643525	five period of Gastrodia elata	31.200
	SRR5643528	five period of Gastrodia elata	29.520
	SRR5643658	five period of Gastrodia elata	26.440
	SRR5643659	five period of Gastrodia elata	51.500
	SRR5643660	five period of Gastrodia elata	48.230
	SRR5643661	five period of Gastrodia elata	52.950
	SRR5643662	five period of Gastrodia elata	61.530
	SRR5643663	five period of Gastrodia elata	53.060
	SRR5643664	five period of Gastrodia elata	57.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.920
SRP279888	Gastro	Gastrodia elata tuber	38.26
	Juven	Juvenile tuber	38.77
	Mother_Gastro	Mother tuber of Gastrodia elata	29.23
	Mother_Juven	Mother tuber of Juvenile	44.75