Detail information of GWHGAAEX002763/evm.TU.scaffold_124.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|15888521|ref|NP_354202.1|8.00E-88DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
KOGKOG10380Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation
nrgi|672130842|ref|XP_008788965.1|0PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Phoenix dactylifera]
Swissprottr|Q8VWF8|RPOT2_NICSY0DNA-directed RNA polymerase 2, chloroplastic/mitochondrial (Precursor)
trEMBLtr|I1PIF4|I1PIF4_ORYGL0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU003805}
TAIRAT1G689900male gametophyte defective 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013111658831211385-
Transcript Sequence

Network for GWHGAAEX002763

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14700.5RPOL_N1264455.70E-81
PF00940.18RNA_pol5689591.60E-156
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.930
SRR2545915Juvenile tuber9.650
SRP108465SRR5643513five period of Gastrodia elata5.320
SRR5643514five period of Gastrodia elata7.130
SRR5643515five period of Gastrodia elata5.180
SRR5643524five period of Gastrodia elata5.610
SRR5643525five period of Gastrodia elata3.970
SRR5643528five period of Gastrodia elata1.700
SRR5643658five period of Gastrodia elata2.280
SRR5643659five period of Gastrodia elata9.640
SRR5643660five period of Gastrodia elata10.490
SRR5643661five period of Gastrodia elata8.300
SRR5643662five period of Gastrodia elata8.470
SRR5643663five period of Gastrodia elata7.810
SRR5643664five period of Gastrodia elata9.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.080
SRR6049655Rhizomagastrodiae_C368-T10_good_18.260
SRR6049656Rhizomagastrodiae_C368-T07_good_19.040
SRR6049657Rhizomagastrodiae_C368-T07_good_19.630
SRR6049658Rhizomagastrodiae_C368-T04_good_18.270
SRR6049659Rhizomagastrodiae_C368-T04_good_18.610
SRR6049660Rhizomagastrodiae_C368-T01_good_19.410
SRR6049661Rhizomagastrodiae_C368-T04_good_18.520
SRR6049662Rhizomagastrodiae_C368-T01_good_19.880
SRR6049663Rhizomagastrodiae_C368-T01_good_110.240
SRR6049664Rhizomagastrodiae_C368-T10_good_17.960
SRR6049665Rhizomagastrodiae_C368-T10_good_17.960
SRP279888GastroGastrodia elata tuber 11.74
JuvenJuvenile tuber14.38
Mother_GastroMother tuber of Gastrodia elata 3.16
Mother_JuvenMother tuber of Juvenile 5.43