Gene detail

Detail information of GWHGAAEX002764/evm.TU.scaffold_124.34

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1305	Amino acid transporter protein
nr	gi\|743861695\|ref\|XP_010943350.1\|	PREDICTED: sodium-coupled neutral amino acid transporter 2 [Elaeis guineensis]
trEMBL	tr\|M0TTA1\|M0TTA1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P24480_001}
TAIR	AT3G30390	Transmembrane amino acid transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000131	1239230	1244038	-

Transcript Sequence
>GWHTAAEX002764 GGGAAAGCATTTTCTAGTAGAACATTATTGCCCAGATTCCATACTTTGGGAATAAGCAGAATCAATTCTGCTCGAACTTCTCTTTTCCCCTACAGTGGGCAATGGAAGAAAATCTCTGAAAGCGAGGACTTTTGCACGCTCATTAGCACAAGTCCAGTCAAAAACTCGCCTCTGATCTTTTGATTCTGCTCAGCTCTCGCACCTAATCCAAGAGTTACCTGAACGATACGGAAGCTTTTCAAAGCCTATATATATTATATTGGTTCGTTTATCGAATGACGGTCCGCTTTGTTTCTTATTTATGCACTAGTTTGAAGTTTCTGTCTCCAACCTAGGTTTTCCGAACATCGGTGACAGGCTCGAATTTAGCTACCGTGTTCTTATTATCTTCTGGTTTTCCGTACTAAATCTGTATATACTCTTGTAAGATCTCGGAGTCTGGATAAATTTTTGTTTGTTCTGTGCCTCAAGATCTAAAATTGCATAGTAATAAAAGCAATTATTTATTTTCTGGTTTATAATTTGCTGCTGGTATTTTCTAATCTAGCTTCTTAAACTTTGCCGAAGATTGCAATTTCAAGTGGTTAAAAATGACAATTGTGAGCGTTTTTTCTGAGGAGAGGGCCAAGAGAAAGCGAAAGGGAAAGCATGTTGCTGAAGAGATTGTTCCATTGCTGCCAACCTTACAGAAAGAGGACGGAGGGTTTGATGAATTTAATGGAGCTTCATTTACTGGTGCTGTGTTTAATCTCTCCACTACTATTGTGGGAGCTGGAATCATGTCTCTTCCGGCCACCATGAAAGTGCTTGGCTTGGTGCCAGGGATACTTATGATTGTGCTTTTTGCATTTCTGGCTGAGGCTTCTGTAGAGTTTTTGATCAGGTTCAGCCGAGCTGGGAAGTCGGTTTCTTATGCTGGAGTTATGGGTGATTCTTTTGGAAAGGCCGGAAGGATTCTGCTTCAGATTTGTGTGGTTGTTAATAATGTTGGCGTGATGGTTGTCTATATGATTATAATCGGTGATGTACTTTCCGGTACGTCTTCCAGTGGTGTACACCACTCAGGTGTCTTGGAAGGTTGGTTTGGGGAGCATTGGTGGAATGGGCGTTTATTTATCGTTCTTCTTACAACACTTCTAATATTTTCTCCTTTAGCAAGCTTCAAGCGTGTGGATTCATTGAGTTACACATCAGCATTATCAGTTGCTCTTGCTGTAGTTTTTGTTGTGATCACCGCTGGGATTGCTGTTCTCAAACTTGTAAATGGAAGCATTTTGATGCCGAAATTGTTTCCTACAATACCGGATCTCGCATCTGTCTTGAAACTGTTCACCGCTGTTCCAATCCTAGTGACAGCATTTATCTGTCATTACAATGTTCATAGCATAGACAATGAGCTCGAAGACTCCTCCCAGATAAAGCCTATTGTGAGGACATCTCTATTACTTTGCACTACTGTTTACATAGCTACAAGTTTCTTTGGCTATCTACTTTTTGGCGAATTGACCCTCCATGATGTTCTTGCCAACTTTGATGTAAACCTCGGCATTCCGTACAGTGCTGTTTTTAGTGATGTCGTCCGAGTCAGCTATGCTGTGCATCTCATGCTTGTTTTCCCTATCATATTCTATGCTTTAAGGATCAATTTGGATGGTCTCATCTTTCCCAAAGCTAGGCCTTTATCTACTGATAATATCAGGTTTACCTTGATTTCGGTAGCTCTTCTTTCTCTTATATTCTTGTGTGCAAATTTTATTCCGAGCATATGGGATGCCTTCCAGTTTACCGGTGCTACTGCTGCGGTTTGCATCGGATTCATCTTTCCTGCTGCGATTACACTACGGGATCCCCATAACATTGGAACATTGAAAGACAAAGTCCTATCTGTTCTAATGATTGTGCTTGCTGTACTATCTAATGGTATTGCCATTTACAGTGATGCTTCTTCCGTCTTCAACACCACAAAAGCTAAATTTCAATATTGAGCTCTTTTGTTCTCCTTTAGTTTAAGAGACCACATGTACATATGTATTTAAGTTATGTATGGTTAGTAGTATGAGCAAATACGCGTTTGTATTTGATCTCTTCTGTTCGAATTTGTCCAATAAAATAACTATATCAAACCAATAATGTTGGTTGAGATGCATTGTGTGTTTAGATGTTTATTGTGTTGCAGATATGACACTGTTGTCTTTGTACAGGTTGAGAAGTTTTAGATTGTTGCAATGAAATTTTTTTAAGTTGTATGCGTACGATTTCTTGGCTTTGCAAGATCTTATAAATAGAGTTTATGATATAAAACAATTTCAATAGGGTTAAAACTTGTAAAAGATTGAGTAAAATGTTTTTTTAATTTTATTTTGTAAGATTTCATTTCATGCATTTTTCAATCATATAAATTTGAAGATGCCACTTAAGCTATGGAAGTGCTTATTGGTTCTTGAACAAG

Network for GWHGAAEX002764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	45	442	4.50E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14207	SLC38A2, SNAT2	Protein digestion and absorption	map04974
		Glutamatergic synapse	map04724
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	108.940
SRP064423	SRR2545915	Juvenile tuber	108.110
SRP108465	SRR5643513	five period of Gastrodia elata	81.470
	SRR5643514	five period of Gastrodia elata	84.870
	SRR5643515	five period of Gastrodia elata	71.490
	SRR5643524	five period of Gastrodia elata	87.660
	SRR5643525	five period of Gastrodia elata	139.880
	SRR5643528	five period of Gastrodia elata	138.740
	SRR5643658	five period of Gastrodia elata	157.730
	SRR5643659	five period of Gastrodia elata	42.050
	SRR5643660	five period of Gastrodia elata	43.460
	SRR5643661	five period of Gastrodia elata	43.510
	SRR5643662	five period of Gastrodia elata	51.300
	SRR5643663	five period of Gastrodia elata	46.510
	SRR5643664	five period of Gastrodia elata	47.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	69.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	73.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	80.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	74.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	93.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	114.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	99.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	91.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	101.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	105.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	86.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	86.890
SRP279888	Gastro	Gastrodia elata tuber	51.83
	Juven	Juvenile tuber	51.62
	Mother_Gastro	Mother tuber of Gastrodia elata	256.87
	Mother_Juven	Mother tuber of Juvenile	192.13