Detail information of GWHGAAEX002769/evm.TU.scaffold_124.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294673281|ref|YP_003573897.1| | 4.00E-111 | alpha-N-arabinofuranosidase [Prevotella ruminicola 23] |
| nr | gi|695051838|ref|XP_009413960.1| | 0 | PREDICTED: alpha-L-arabinofuranosidase 1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SG80|ASD1_ARATH | 0 | Alpha-L-arabinofuranosidase 1 (Precursor) |
| trEMBL | tr|M0TT48|M0TT48_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P23950_001} |
| TAIR | AT3G10740 | 0 | alpha-L-arabinofuranosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000131 | 1484362 | 1508108 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002769
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06964.11 | Alpha-L-AF_C | 468 | 654 | 3.00E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH51 |
| Carbohydrate-Active enzymes Family | GH51 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01209 | abfA | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046373 | Biological Process | L-arabinose metabolic process |
| GO:0046556 | Molecular Function | alpha-L-arabinofuranosidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.940 |
| SRR2545915 | Juvenile tuber | 20.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.400 |
| SRR5643514 | five period of Gastrodia elata | 18.360 | |
| SRR5643515 | five period of Gastrodia elata | 11.030 | |
| SRR5643524 | five period of Gastrodia elata | 16.350 | |
| SRR5643525 | five period of Gastrodia elata | 154.850 | |
| SRR5643528 | five period of Gastrodia elata | 221.390 | |
| SRR5643658 | five period of Gastrodia elata | 262.570 | |
| SRR5643659 | five period of Gastrodia elata | 2.810 | |
| SRR5643660 | five period of Gastrodia elata | 1.830 | |
| SRR5643661 | five period of Gastrodia elata | 3.010 | |
| SRR5643662 | five period of Gastrodia elata | 1.900 | |
| SRR5643663 | five period of Gastrodia elata | 2.240 | |
| SRR5643664 | five period of Gastrodia elata | 2.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.16 |
| Juven | Juvenile tuber | 7.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.04 | |
| Mother_Juven | Mother tuber of Juvenile | 12.18 |