Detail information of GWHGAAEX002771/evm.TU.scaffold_124.44


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|41615108|ref|NP_963606.1|7.00E-1850S ribosomal protein L7Ae [Nanoarchaeum equitans Kin4-M]
KOGKOG31671.00E-73Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation
nrgi|672119638|ref|XP_008783062.1|1.37E-89PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Phoenix dactylifera]
Swissprottr|Q9LEY9|NHP2_ARATH4.00E-74H/ACA ribonucleoprotein complex subunit 2-like protein
trEMBLtr|M0TTI3|M0TTI3_MUSAM2.00E-86Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P25300_001}
TAIRAT5G081801.00E-73Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013115173591525454-
Transcript Sequence

Network for GWHGAAEX002771

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.25Ribosomal_L7Ae361191.30E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11129NHP2, NOLA2 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding
GO:0005730Cellular Componentnucleolus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms71.980
SRR2545915Juvenile tuber94.880
SRP108465SRR5643513five period of Gastrodia elata85.040
SRR5643514five period of Gastrodia elata93.130
SRR5643515five period of Gastrodia elata85.620
SRR5643524five period of Gastrodia elata85.670
SRR5643525five period of Gastrodia elata75.400
SRR5643528five period of Gastrodia elata58.360
SRR5643658five period of Gastrodia elata43.370
SRR5643659five period of Gastrodia elata117.010
SRR5643660five period of Gastrodia elata125.120
SRR5643661five period of Gastrodia elata126.860
SRR5643662five period of Gastrodia elata108.740
SRR5643663five period of Gastrodia elata103.720
SRR5643664five period of Gastrodia elata108.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_171.980
SRR6049655Rhizomagastrodiae_C368-T10_good_162.890
SRR6049656Rhizomagastrodiae_C368-T07_good_182.070
SRR6049657Rhizomagastrodiae_C368-T07_good_178.030
SRR6049658Rhizomagastrodiae_C368-T04_good_174.100
SRR6049659Rhizomagastrodiae_C368-T04_good_171.510
SRR6049660Rhizomagastrodiae_C368-T01_good_183.850
SRR6049661Rhizomagastrodiae_C368-T04_good_183.630
SRR6049662Rhizomagastrodiae_C368-T01_good_193.220
SRR6049663Rhizomagastrodiae_C368-T01_good_197.580
SRR6049664Rhizomagastrodiae_C368-T10_good_187.970
SRR6049665Rhizomagastrodiae_C368-T10_good_187.970
SRP279888GastroGastrodia elata tuber 124.27
JuvenJuvenile tuber105.67
Mother_GastroMother tuber of Gastrodia elata 54.99
Mother_JuvenMother tuber of Juvenile 42.82