Detail information of GWHGAAEX002776/evm.TU.scaffold_124.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|226946892|ref|YP_002801965.1| | 1.00E-130 | agmatine deiminase [Azotobacter vinelandii DJ] |
| nr | gi|743869220|ref|XP_010905762.1| | 0 | PREDICTED: agmatine deiminase [Elaeis guineensis] |
| Swissprot | tr|Q8GWW7|AGUA_ARATH | 2.00E-178 | Agmatine deiminase |
| trEMBL | tr|M0U468|M0U468_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P28110_001} |
| TAIR | AT5G08170 | 8.00E-178 | porphyromonas-type peptidyl-arginine deiminase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000131 | 1696689 | 1727993 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002776
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04371.14 | PAD_porph | 15 | 376 | 1.60E-122 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10536 | aguA | Metabolic pathways | map01100 |
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009446 | Biological Process | putrescine biosynthetic process |
| GO:0004668 | Molecular Function | protein-arginine deiminase activity |
| GO:0047632 | Molecular Function | agmatine deiminase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 115.100 |
| SRR2545915 | Juvenile tuber | 99.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 81.460 |
| SRR5643514 | five period of Gastrodia elata | 91.880 | |
| SRR5643515 | five period of Gastrodia elata | 81.440 | |
| SRR5643524 | five period of Gastrodia elata | 86.310 | |
| SRR5643525 | five period of Gastrodia elata | 121.930 | |
| SRR5643528 | five period of Gastrodia elata | 90.650 | |
| SRR5643658 | five period of Gastrodia elata | 99.360 | |
| SRR5643659 | five period of Gastrodia elata | 83.180 | |
| SRR5643660 | five period of Gastrodia elata | 87.110 | |
| SRR5643661 | five period of Gastrodia elata | 73.180 | |
| SRR5643662 | five period of Gastrodia elata | 80.000 | |
| SRR5643663 | five period of Gastrodia elata | 88.090 | |
| SRR5643664 | five period of Gastrodia elata | 84.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 104.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 86.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 94.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 126.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 125.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 149.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 108.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 116.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 79.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 91.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 78.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 78.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 121.91 |
| Juven | Juvenile tuber | 147.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 139.28 | |
| Mother_Juven | Mother tuber of Juvenile | 125.14 |