Gene detail

Detail information of GWHGAAEX002777/evm.TU.scaffold_124.50

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1915	Cell cycle control protein (crooked neck)
nr	gi\|672107065\|ref\|XP_008792203.1\|	PREDICTED: crooked neck-like protein 1 [Phoenix dactylifera]
trEMBL	tr\|C5WPP1\|C5WPP1_SORBI	Putative uncharacterized protein Sb01g012080 {ECO:0000313\|EMBL:EER93674.1}
TAIR	AT5G41770	crooked neck protein, putative / cell cycle protein, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000131	1755644	1775573	-

Transcript Sequence
>GWHTAAEX002777 ATTAAGCTCAGTTTCACGCCCCCTTTAATATTAACCCAATTAAACCCTAGTTAATTCACTGGTTCTCCCTCCCTCCTGTCTGCAGGTGCCGCTTTTGGTGAATCTCTGGCGATGGCTTCTACAGCCAAAGACGCGGATCCTAACCTAGGGTTTCTGACGAAACGCGACACGGAGGTGAAGCTTCCCCGCCCAACCCGCGTCAAAAACAAAACCCCTGCTCCGATCCAGATCACCGCTGAGCAAATCCTCCGAGAAGCCCGTGAGCGCCAGGAGCCTGAAATCCGTCCTCCCAAGCAGAAAATCACTGATCCCACCGAACTAGCCGATTACCGCCTTCGTCGACGCAAGGAATTCGAGGACAAAATTCGCCGCGCACGATGGAACGTCCGGGTGTGGATCAAGTACGCCGAATGGGAGGAGAGCCAGAAGGATTTCGCCCGCGCTCGCTCCGTTTGGGAGCGATCTCTGGAGGTGGACTACAGGGAGCGAACCATCTGGCTCAAGTACGCCGAGTTCGAAATGCGGAATCGTTTCGTCAACCATGCCCGCAATGTCTGGGACCGAGCCGTCTCTCTTCTTCCCAGAGTTGATCAGCTCTGGTACAAGTACATCCATATGGAAGAGATGCTTGGGGATGTGGCCGGTGCCCGCCAGGTGTTCGAGAGATGGATGGACTGGCAGCCAGACCGGGAGGGTTGGCTTTCTTTTATCAAATTTGAGCTGAGGTATGGTGAGGTAGATCGAGCTCGTCAGGTGTTTGAAAGATATGTTTCTTGCCACCCGCGTGCTGCTGCTTGGATCAGATATTGCAAGTTCGAGATGAAAAATGGCGAAATTGCTCGGGCTCGTGCTATCTATGAACGCGCAGCTGATCTTCTTTCTGGTGAGGAGGAGGATGCGGAGGAGCTTTTAGTGGCGTTTGCAGAGTTTGAAGAGAAGTGCAAGGAGATTGACAGGGCAAGATGCATTTATAAGTATGCGCTTGATCATATGCCCAAGGGAAGGGCCGAGGACCTGTATAAGAAGTATGTAGCGTTTGAGAAGCAGTATGGAGACCGGGAAGGGATAGAGGATGCTATTGTTGGGAAAAGAAGATTGCAGTATGAGGATGAGGTTAGGAAGAATTCGTTCAACTATGATTCGTGGTTTGATTATATTAGATTGGAAGAAAATGTTGGCAATAAGGACATGATCAGGGAAGTTTATGAAAGAGCAATTTCAAATGTGCCCCCAGCTGAAGAGAAGAGATATTGGCATCGTTATATATATTTATGGATTTATTATGCTTTGTATGAAGAACTCAATGCTGAGGACATGGACAGAACAAGGGATGTTTATAGGGAATGCCTTAAATTGATTCCTCATAAGAAGTTTTCATTTGCAAAAATCTGGCTTATGTCGGCTCAGTTTGAGATACGTCAGAAAAATCTGAAGGCTGCAAGACAGATTTTGGGAAATGCTATTGGAATGGCACCTAAAGATAAGGTGTTTAAGAAATATATTGAAATAGAGCTGCAACTGGGCAATATAGATCGTTGCAGAAAACTCTATGAGAAATATATTGAGTGGGCTCCAGCGAATTGTTATGCTTGGAGAAAATATGCTGAGTTAGAGAGATCTTTAAGTGAAACTGAACGTGCTCGTGGAATATTTGAATTGGCTATTGCTCAACTAGCACTTGACATGCCAGAGTTGTTATGGAAGGCATACATAGACTTTGAAATATCAGAAAGCGAGTTTGAGAGGACGAGGCAACTCTATGAGAGGCTTCTTGATAGAACAAAGCACCTGAAGGTGTGGATAAGCTATGCCAAATTTGAGGCATGTGCAGGTATAGATGCCTATGATAGTGATGACAAGGCACAACTTGAGAACGGTGATTTGTCATATCAGGAACGCCAAATAGAGCGGATTAACAGATGCAGAGGCGTTTTTGAAAAAGCATTTGATTACTTTCGCACATCTGCACCTGAAATGAAGGAGGAAAGAGCAATGCTTTTGGAGGAATGGTTGAACATGGAAACTGACTTTGCAGATGCTGGTGACGTATCTTTAGTGCAAAAGAAGTTACCCAGGAAAGTTAAGAGAAAGCGAGCCATTTCATCTGAAGATGGAACTCCTGCTGGATACGAAGAATACTTCGATTACATTTTCCCTGATGAGGTGGCGATGGCACCCAATCTTAAGATACTCGAAGCTGCTTACAAATGGAAGAAGCATAAAGATGGTTCCGATGAGGACTGAGCTAGGGATATCAAACGTTTGGTTCTCACTAATTTCAATACCTCTCGTACGGCCTCCTCAGCCTCGGCCATGGATTGAACATGATTGCTTGTGCAACCGCGAAACATTTCTAGTACGATCGTAGGGGTGCAAACATGAGTGTAAATGAGCTGAGTTTGAACAAGTTGAAAGCTTGTTCTTGTGTTTGGCTTCGTGTGGTTTGAGATCTGTTCGTGATCGGCTCTAATTTGTTTATCTTCGAGATGAAATCGAATTCAAATGTACATTATTTTTTAATTTTATTTAGCCGAACTCCTAGTCTTGG

Network for GWHGAAEX002777

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02184.15	HAT	208	236	4.80E-09
PF13181.5	TPR_8	468	490	0.15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12869	CRN, CRNKL1, CLF1, SYF3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.530
SRP064423	SRR2545915	Juvenile tuber	33.940
SRP108465	SRR5643513	five period of Gastrodia elata	30.950
	SRR5643514	five period of Gastrodia elata	28.120
	SRR5643515	five period of Gastrodia elata	27.010
	SRR5643524	five period of Gastrodia elata	26.340
	SRR5643525	five period of Gastrodia elata	27.900
	SRR5643528	five period of Gastrodia elata	22.370
	SRR5643658	five period of Gastrodia elata	26.880
	SRR5643659	five period of Gastrodia elata	37.400
	SRR5643660	five period of Gastrodia elata	37.860
	SRR5643661	five period of Gastrodia elata	35.460
	SRR5643662	five period of Gastrodia elata	31.810
	SRR5643663	five period of Gastrodia elata	32.830
	SRR5643664	five period of Gastrodia elata	33.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.730
SRP279888	Gastro	Gastrodia elata tuber	28.55
	Juven	Juvenile tuber	46.20
	Mother_Gastro	Mother tuber of Gastrodia elata	19.25
	Mother_Juven	Mother tuber of Juvenile	30.66