Detail information of GWHGAAEX002779/evm.TU.scaffold_124.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0530 | 3.00E-139 | Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit |
| nr | gi|672181120|ref|XP_008810767.1| | 1.75E-171 | PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Phoenix dactylifera] |
| Swissprot | tr|P93227|FNTA_SOLLC | 7.00E-151 | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha |
| trEMBL | tr|D7U1N5|D7U1N5_VITVI | 3.00E-164 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI36651.3} |
| TAIR | AT3G59380 | 3.00E-139 | farnesyltransferase A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000131 | 1981868 | 1996106 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002779
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01239.21 | PPTA | 64 | 89 | 2.30E-08 |
| PF01239.21 | PPTA | 98 | 124 | 1.50E-07 |
| PF01239.21 | PPTA | 134 | 160 | 2.70E-12 |
| PF01239.21 | PPTA | 168 | 194 | 8.30E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05955 | FNTA | Biosynthesis of secondary metabolites | map01110 |
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0018342 | Biological Process | protein prenylation |
| GO:0008318 | Molecular Function | protein prenyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.690 |
| SRR2545915 | Juvenile tuber | 35.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.490 |
| SRR5643514 | five period of Gastrodia elata | 28.250 | |
| SRR5643515 | five period of Gastrodia elata | 30.110 | |
| SRR5643524 | five period of Gastrodia elata | 28.350 | |
| SRR5643525 | five period of Gastrodia elata | 44.340 | |
| SRR5643528 | five period of Gastrodia elata | 39.790 | |
| SRR5643658 | five period of Gastrodia elata | 56.850 | |
| SRR5643659 | five period of Gastrodia elata | 32.230 | |
| SRR5643660 | five period of Gastrodia elata | 32.630 | |
| SRR5643661 | five period of Gastrodia elata | 33.380 | |
| SRR5643662 | five period of Gastrodia elata | 30.760 | |
| SRR5643663 | five period of Gastrodia elata | 31.960 | |
| SRR5643664 | five period of Gastrodia elata | 30.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.34 |
| Juven | Juvenile tuber | 48.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.24 | |
| Mother_Juven | Mother tuber of Juvenile | 24.95 |