Gene detail

Detail information of GWHGAAEX002781/evm.TU.scaffold_124.56

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108802877\|ref\|YP_642814.1\|	5.00E-28	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
KOG	KOG0032	0	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
nr	gi\|672196105\|ref\|XP_008776719.1\|	0	PREDICTED: calcium-dependent protein kinase 8-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q38873\|CDPK7_ARATH	0	Calcium-dependent protein kinase 7
trEMBL	tr\|C5YTW8\|C5YTW8_SORBI	0	Putative uncharacterized protein Sb08g007660 {ECO:0000313\|EMBL:EES15873.1}
TAIR	AT5G19450	0	calcium-dependent protein kinase 19

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000131	2096973	2105913	+

Transcript Sequence
>GWHTAAEX002781 GAGGGGAGAAGGAGGAGGAATGGGCGGGTGCTACTCTTCTTCCCCTTCAATACCGAATCCAGCGCACAATGAGTCCATCCGGATGGTCCGTTCGGCAGGCGGCAGAACGGACGGCGAGATGTCGATACGCGTCCTTTCGAACCCGACCTCCTCGGAGGAGTTCCTGAGGCAGTACAGGCTGGACCGAGAGCTGGGACGGGGCGAGTTCGGGCTAACCCGGCTCTGCTTCGATTGCGGGACGGGGGCGGCGCTGGCCTGCAAGACAATTTCGAAGCGGCGGCTGAGGAGCCACGTGGACCTTAGCGACGTGAGGCGGGAGGTGGAAATCATGCGCCGGCTGCCACGTCACCCTAACCTGGTCCGCCTCGTGGACGCCTGCGAGGACGGCGACTCCGTACACCTAATCATGGAGCTCTGCGAGGGCGGCGAGCTGTTCGACCGCATTGTTGCCAGAGGCCATTTCTCCGAAAGGGAGGCCGCCGCCGTCGCCAAAACCATCGTCGAGGTGGTTCTGGTGTGCCATCAGAATGGAGTCATCCATAGGGATCTAAAGCCTGAGAACTTTCTGTTCCTGAACGACTCCCGAGAGTCCCCCCTAAAAGCAATCGATTTTGGCCTCTCTGTATTCTTCGAGCCTGGGGAGCGGTTCAACGAGATTGTGGGGAGTCCATATTACATGGCACCGGAGGTTTTGAAGCGCAGCTATGGGCCTGAGGTTGACGTATGGAGCGCTGGGGTCATCCTCTACATCCTGCTGTGCGGCGTCCCCCCCTTTTGGGCAGAGACTGATGAAGGAATCGCACAGGCGATCGTACGGTCGGCTGTTGATTTCATGAGGGAGCCATGGCCTAAGGTCTCGCAGAGCGCAAAGGATCTCGTGAGGCGCATGCTCGACCCGGATCCACGCACGAGGTTAACGGCTCAGCAAGTTCTAGAACACCCATGGTTGCAGAATGCCAAATCAGCTCCTAATATTCCACTTGGAGAGGAAGTCAGGTATCGGCTCAAGCAGTTTCTAGTGATGAACAAATTCAAGAAGAAGGCTTTAAGGGTTGTAGCTGAGCATCTGCCTTTAGAAGAAATTAATGGAATCAAACAGATGTTTCATATGATGGACAAGGATAAGAATGGAAACTTAACATTTGAAGAACTTAAGGAAGGGTTCCACAAGATCGGTCAGCCTGTTGCAGAACCAGAAGTTAGGATGTTATTGGAAGCAGCAGACACAGATGGAAATGGCACACTGGATTGCGACGAGTTTTTGACCGTTTCCTTGCACCTAAGGAAAGTAAATAGTGAGCAGCATCTTCCCAAGGCATTCAATTTCTTTGACAAGAATGGCAGTGGATATATAGAGATTGATGAGCTGAGAGAAGCTCTTGGGGAAGAAGACCACATCGACCAAACTGATCAAATTATTCAAGAAATTATATCAGATGTTGACATTGATAAGGATGGTAAGATCAGTTACCAAGAATTTGAGGCAATGATGAAGTCAGGGACAGATTGGAGGAATGCTTCAAGGCAGTATTCGCGCGCGTACTATAATACATTAAGCAGAAAATTGCTGAAAGAGGCGTCAAAGCAGCCGAAACAGGTCGAGAATGAGGCTCAAGTCATATTTAACATTTAG

Network for GWHGAAEX002781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	52	310	1.70E-73
PF13499.5	EF-hand_7	358	416	4.70E-10
PF13499.5	EF-hand_7	430	492	7.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.990
SRP064423	SRR2545915	Juvenile tuber	5.400
SRP108465	SRR5643513	five period of Gastrodia elata	5.260
	SRR5643514	five period of Gastrodia elata	4.630
	SRR5643515	five period of Gastrodia elata	5.180
	SRR5643524	five period of Gastrodia elata	4.160
	SRR5643525	five period of Gastrodia elata	7.090
	SRR5643528	five period of Gastrodia elata	7.010
	SRR5643658	five period of Gastrodia elata	7.010
	SRR5643659	five period of Gastrodia elata	7.470
	SRR5643660	five period of Gastrodia elata	6.320
	SRR5643661	five period of Gastrodia elata	6.390
	SRR5643662	five period of Gastrodia elata	7.330
	SRR5643663	five period of Gastrodia elata	8.090
	SRR5643664	five period of Gastrodia elata	7.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.420
SRP279888	Gastro	Gastrodia elata tuber	5.45
	Juven	Juvenile tuber	4.73
	Mother_Gastro	Mother tuber of Gastrodia elata	8.70
	Mother_Juven	Mother tuber of Juvenile	8.75