Detail information of GWHGAAEX002783/evm.TU.scaffold_124.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1279 | 4.00E-106 | Chromatin remodeling factor subunit and related transcription factors |
| nr | gi|672170829|ref|XP_008805483.1| | 0 | PREDICTED: SWI/SNF complex subunit SWI3B [Phoenix dactylifera] |
| Swissprot | tr|Q84JG2|SWI3B_ARATH | 1.00E-121 | SWI/SNF complex subunit SWI3B |
| trEMBL | tr|M0U6P2|M0U6P2_MUSAM | 2.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP05810_001} |
| TAIR | AT2G33610 | 4.00E-106 | switch subunit 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000131 | 2168974 | 2181089 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002783
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04433.16 | SWIRM | 68 | 153 | 5.40E-25 |
| PF00249.30 | Myb_DNA-binding | 233 | 274 | 1.40E-10 |
| PF16495.4 | SWIRM-assoc_1 | 386 | 457 | 5.50E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11649 | SMARCC | Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.080 |
| SRR2545915 | Juvenile tuber | 10.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.810 |
| SRR5643514 | five period of Gastrodia elata | 8.360 | |
| SRR5643515 | five period of Gastrodia elata | 7.420 | |
| SRR5643524 | five period of Gastrodia elata | 6.760 | |
| SRR5643525 | five period of Gastrodia elata | 9.840 | |
| SRR5643528 | five period of Gastrodia elata | 12.010 | |
| SRR5643658 | five period of Gastrodia elata | 7.540 | |
| SRR5643659 | five period of Gastrodia elata | 9.170 | |
| SRR5643660 | five period of Gastrodia elata | 8.800 | |
| SRR5643661 | five period of Gastrodia elata | 9.780 | |
| SRR5643662 | five period of Gastrodia elata | 9.040 | |
| SRR5643663 | five period of Gastrodia elata | 9.470 | |
| SRR5643664 | five period of Gastrodia elata | 6.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.87 |
| Juven | Juvenile tuber | 9.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.36 | |
| Mother_Juven | Mother tuber of Juvenile | 13.54 |