Detail information of GWHGAAEX002784/evm.TU.scaffold_124.60


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18150Predicted E3 ubiquitin ligase
nrgi|743765162|ref|XP_010912800.1|0PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Elaeis guineensis]
Swissprottr|Q84RR0|ARI7_ARATH0Probable E3 ubiquitin-protein ligase ARI7
trEMBLtr|M0TUJ0|M0TUJ0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P28870_001}
TAIRAT1G654300IBR domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013121875002218731+
Transcript Sequence

Network for GWHGAAEX002784

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01485.20IBR2012633.20E-15
PF01485.20IBR2803281.20E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms102.710
SRR2545915Juvenile tuber111.200
SRP108465SRR5643513five period of Gastrodia elata103.380
SRR5643514five period of Gastrodia elata107.570
SRR5643515five period of Gastrodia elata99.250
SRR5643524five period of Gastrodia elata108.290
SRR5643525five period of Gastrodia elata120.190
SRR5643528five period of Gastrodia elata129.090
SRR5643658five period of Gastrodia elata121.580
SRR5643659five period of Gastrodia elata140.120
SRR5643660five period of Gastrodia elata138.530
SRR5643661five period of Gastrodia elata139.480
SRR5643662five period of Gastrodia elata150.980
SRR5643663five period of Gastrodia elata137.840
SRR5643664five period of Gastrodia elata171.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1100.820
SRR6049655Rhizomagastrodiae_C368-T10_good_195.630
SRR6049656Rhizomagastrodiae_C368-T07_good_182.750
SRR6049657Rhizomagastrodiae_C368-T07_good_1119.500
SRR6049658Rhizomagastrodiae_C368-T04_good_192.320
SRR6049659Rhizomagastrodiae_C368-T04_good_1128.780
SRR6049660Rhizomagastrodiae_C368-T01_good_197.830
SRR6049661Rhizomagastrodiae_C368-T04_good_191.070
SRR6049662Rhizomagastrodiae_C368-T01_good_168.670
SRR6049663Rhizomagastrodiae_C368-T01_good_172.630
SRR6049664Rhizomagastrodiae_C368-T10_good_187.200
SRR6049665Rhizomagastrodiae_C368-T10_good_187.200
SRP279888GastroGastrodia elata tuber 126.90
JuvenJuvenile tuber177.26
Mother_GastroMother tuber of Gastrodia elata 145.62
Mother_JuvenMother tuber of Juvenile 226.73