Detail information of GWHGAAEX002785/evm.TU.scaffold_124.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672168385|ref|XP_008804192.1| | 0 | PREDICTED: AP2-like ethylene-responsive transcription factor BBM [Phoenix dactylifera] |
| Swissprot | tr|Q8LSN2|BBM2_BRANA | 2.00E-136 | AP2-like ethylene-responsive transcription factor BBM2 |
| trEMBL | tr|B9RM33|B9RM33_RICCO | 0 | Protein AINTEGUMENTA, putative {ECO:0000313|EMBL:EEF47356.1} |
| TAIR | AT5G17430 | 8.00E-137 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000131 | 2267815 | 2274690 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002785
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 221 | 276 | 3.30E-08 |
| PF00847.19 | AP2 | 320 | 370 | 1.30E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-AP2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.040 |
| SRR2545915 | Juvenile tuber | 0.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.800 |
| SRR5643514 | five period of Gastrodia elata | 1.550 | |
| SRR5643515 | five period of Gastrodia elata | 0.170 | |
| SRR5643524 | five period of Gastrodia elata | 1.470 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.03 | |
| Mother_Juven | Mother tuber of Juvenile | 0.04 |