Detail information of GWHGAAEX002787/evm.TU.scaffold_124.67


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428305261|ref|YP_007142086.1|4.00E-74ATP-dependent Clp protease proteolytic subunit ClpP [Crinalium epipsammum PCC 9333]
KOGKOG08402.00E-138ATP-dependent Clp protease, proteolytic subunit
nrgi|720069272|ref|XP_010277386.1|2.90E-164PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Nelumbo nucifera]
Swissprottr|Q9XJ36|CLPR2_ARATH7.00E-139ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic (Precursor)
trEMBLtr|A0A059C100|A0A059C100_EUCGR9.00E-155ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}
TAIRAT1G124102.00E-138CLP protease proteolytic subunit 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013124277132465711-
Transcript Sequence

Network for GWHGAAEX002787

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00574.22CLP_protease972722.30E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01358clpP, CLPP Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0004252Molecular Functionserine-type endopeptidase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.270
SRR2545915Juvenile tuber22.270
SRP108465SRR5643513five period of Gastrodia elata24.360
SRR5643514five period of Gastrodia elata32.620
SRR5643515five period of Gastrodia elata28.080
SRR5643524five period of Gastrodia elata31.240
SRR5643525five period of Gastrodia elata20.120
SRR5643528five period of Gastrodia elata18.590
SRR5643658five period of Gastrodia elata18.470
SRR5643659five period of Gastrodia elata26.060
SRR5643660five period of Gastrodia elata28.180
SRR5643661five period of Gastrodia elata28.690
SRR5643662five period of Gastrodia elata32.060
SRR5643663five period of Gastrodia elata30.820
SRR5643664five period of Gastrodia elata28.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.810
SRR6049655Rhizomagastrodiae_C368-T10_good_129.150
SRR6049656Rhizomagastrodiae_C368-T07_good_121.800
SRR6049657Rhizomagastrodiae_C368-T07_good_121.520
SRR6049658Rhizomagastrodiae_C368-T04_good_118.380
SRR6049659Rhizomagastrodiae_C368-T04_good_118.210
SRR6049660Rhizomagastrodiae_C368-T01_good_120.360
SRR6049661Rhizomagastrodiae_C368-T04_good_118.110
SRR6049662Rhizomagastrodiae_C368-T01_good_123.840
SRR6049663Rhizomagastrodiae_C368-T01_good_119.580
SRR6049664Rhizomagastrodiae_C368-T10_good_129.920
SRR6049665Rhizomagastrodiae_C368-T10_good_129.920
SRP279888GastroGastrodia elata tuber 46.77
JuvenJuvenile tuber48.06
Mother_GastroMother tuber of Gastrodia elata 20.22
Mother_JuvenMother tuber of Juvenile 33.21