Detail information of GWHGAAEX002796/evm.TU.scaffold_124.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|42524005|ref|NP_969385.1|4.00E-68multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOGKOG00540Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nrgi|672199946|ref|XP_008777748.1|0PREDICTED: putative ABC transporter C family member 15 [Phoenix dactylifera]
Swissprottr|Q7GB25|AB5C_ARATH0ABC transporter C family member 5
trEMBLtr|M7YF87|M7YF87_TRIUA0Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_30169-P1}
TAIRAT1G041200multidrug resistance-associated protein 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013129834313029917+
Transcript Sequence

Network for GWHGAAEX002796

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.22ABC_membrane1113743.50E-19
PF00005.26ABC_tran4455769.40E-15
PF00664.22ABC_membrane7259652.00E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.800
SRR2545915Juvenile tuber31.090
SRP108465SRR5643513five period of Gastrodia elata7.280
SRR5643514five period of Gastrodia elata3.140
SRR5643515five period of Gastrodia elata5.850
SRR5643524five period of Gastrodia elata2.730
SRR5643525five period of Gastrodia elata1.420
SRR5643528five period of Gastrodia elata0.910
SRR5643658five period of Gastrodia elata3.130
SRR5643659five period of Gastrodia elata9.930
SRR5643660five period of Gastrodia elata6.710
SRR5643661five period of Gastrodia elata5.370
SRR5643662five period of Gastrodia elata11.600
SRR5643663five period of Gastrodia elata12.820
SRR5643664five period of Gastrodia elata18.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.800
SRR6049655Rhizomagastrodiae_C368-T10_good_110.410
SRR6049656Rhizomagastrodiae_C368-T07_good_112.970
SRR6049657Rhizomagastrodiae_C368-T07_good_114.060
SRR6049658Rhizomagastrodiae_C368-T04_good_17.870
SRR6049659Rhizomagastrodiae_C368-T04_good_18.240
SRR6049660Rhizomagastrodiae_C368-T01_good_18.410
SRR6049661Rhizomagastrodiae_C368-T04_good_116.110
SRR6049662Rhizomagastrodiae_C368-T01_good_14.930
SRR6049663Rhizomagastrodiae_C368-T01_good_11.730
SRR6049664Rhizomagastrodiae_C368-T10_good_13.580
SRR6049665Rhizomagastrodiae_C368-T10_good_13.580
SRP279888GastroGastrodia elata tuber 12.45
JuvenJuvenile tuber5.42
Mother_GastroMother tuber of Gastrodia elata 1.61
Mother_JuvenMother tuber of Juvenile 4.08