Detail information of GWHGAAEX002800/evm.TU.scaffold_124.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430742304|ref|YP_007201433.1| | 2.00E-20 | protein kinase family protein [Singulisphaera acidiphila DSM 18658] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|672134033|ref|XP_008790659.1| | 0 | PREDICTED: PTI1-like tyrosine-protein kinase 3 [Phoenix dactylifera] |
| Swissprot | tr|B9DFG5|PTI13_ARATH | 0 | PTI1-like tyrosine-protein kinase 3 |
| trEMBL | tr|A9PGH8|A9PGH8_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERP50736.1} |
| TAIR | AT3G59350 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000131 | 3079801 | 3102407 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002800
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 76 | 348 | 1.50E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIII |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13436 | PTI1 | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004713 | Molecular Function | protein tyrosine kinase activity |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.460 |
| SRR2545915 | Juvenile tuber | 14.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.020 |
| SRR5643514 | five period of Gastrodia elata | 18.590 | |
| SRR5643515 | five period of Gastrodia elata | 16.340 | |
| SRR5643524 | five period of Gastrodia elata | 15.840 | |
| SRR5643525 | five period of Gastrodia elata | 20.240 | |
| SRR5643528 | five period of Gastrodia elata | 24.160 | |
| SRR5643658 | five period of Gastrodia elata | 19.870 | |
| SRR5643659 | five period of Gastrodia elata | 16.980 | |
| SRR5643660 | five period of Gastrodia elata | 17.470 | |
| SRR5643661 | five period of Gastrodia elata | 16.700 | |
| SRR5643662 | five period of Gastrodia elata | 18.590 | |
| SRR5643663 | five period of Gastrodia elata | 17.620 | |
| SRR5643664 | five period of Gastrodia elata | 15.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.07 |
| Juven | Juvenile tuber | 12.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.19 | |
| Mother_Juven | Mother tuber of Juvenile | 33.75 |