Detail information of GWHGAAEX002802/evm.TU.scaffold_125.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383753291|ref|YP_005432194.1| | 3.00E-12 | putative beta-glucanase [Selenomonas ruminantium subsp. lactilytica TAM6421] |
| nr | gi|672163388|ref|XP_008801542.1| | 2.88E-143 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Phoenix dactylifera] |
| Swissprot | tr|Q38910|XTH23_ARATH | 2.00E-131 | Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor) |
| trEMBL | tr|M0RMW1|M0RMW1_MUSAM | 1.00E-139 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT4G25810 | 5.00E-131 | xyloglucan endotransglycosylase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000122 | 21575 | 23196 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002802
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 28 | 207 | 2.30E-57 |
| PF06955.11 | XET_C | 236 | 278 | 1.40E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14504 | TCH4 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0048046 | Cellular Component | apoplast |
| GO:0005618 | Cellular Component | cell wall |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 162.510 |
| SRR2545915 | Juvenile tuber | 57.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 140.800 |
| SRR5643514 | five period of Gastrodia elata | 132.740 | |
| SRR5643515 | five period of Gastrodia elata | 231.370 | |
| SRR5643524 | five period of Gastrodia elata | 92.480 | |
| SRR5643525 | five period of Gastrodia elata | 85.800 | |
| SRR5643528 | five period of Gastrodia elata | 119.400 | |
| SRR5643658 | five period of Gastrodia elata | 15.880 | |
| SRR5643659 | five period of Gastrodia elata | 104.230 | |
| SRR5643660 | five period of Gastrodia elata | 90.190 | |
| SRR5643661 | five period of Gastrodia elata | 112.210 | |
| SRR5643662 | five period of Gastrodia elata | 84.550 | |
| SRR5643663 | five period of Gastrodia elata | 80.440 | |
| SRR5643664 | five period of Gastrodia elata | 99.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 145.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 83.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 116.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 173.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 104.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 67.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 68.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 100.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 65.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 65.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 73.29 |
| Juven | Juvenile tuber | 77.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 328.47 | |
| Mother_Juven | Mother tuber of Juvenile | 477.93 |