Gene detail

Detail information of GWHGAAEX002806/evm.TU.scaffold_125.12

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428227041\|ref\|YP_007111138.1\|	1.00E-83	TrkA-N domain-containing protein [Geitlerinema sp. PCC 7407]
nr	gi\|695045727\|ref\|XP_009410664.1\|	0	PREDICTED: probable ion channel POLLUX isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5N941\|POLLU_ORYSJ	0	Probable ion channel POLLUX
trEMBL	tr\|M0TK00\|M0TK00_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P23140_001}
TAIR	AT5G49960	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000122	760699	782928	+

Transcript Sequence
>GWHTAAEX002806 AGGAGAGAGTCCTGAGGAGTCGTGCTTGCTCGATCTTTTCTGGAATCAATGGTGCCACTGCCAGACGAAGACTCGGATCTCAAAACCGGCAACGGGGGCTGCGCGCAGCAGAAGCTGAGGAAGTCGATCACATTAGCAGGGGACAGGCAGTCATCCCCATCATCTGCTTCATCTGCAGCGACTCAGGCTCCGCATTTACCCTCCATCCGGCGCGCGAGCAGCGGCCCGCTCCCGCCGGTGGCGGCTAGTCCTGTGCGGCGCCTTGCCGTCGCTGTCGACGATCCTTCTGACGCACCGGCTTTCCATGGCCCGCTATTTCCGGCCGTTCGGCGGGCCAACAGCGGATCAGCTCCGCCTGCTGCCCCGCCGCGCAGGCTTATGGTTGCCGTTGATGACCCGTCCGATGCGCCTGCTTATGGTGTTCTCGATCGCGATTGGTTCTATCCCTCTTTCCTCGGGCCGCACCCTTCCCGCCCCCGAGCGTCTGCAAGGGCTAACCGTACGAAGGTCGACCCGGCGGTTAAGAAGATCTCAGTGCCGGAGCAAGTGACAGCCGAAAAGAACGCCTCGAAATTGCTGCAGGAGAAGGAAAAGAAAAAGATGCTTGCGGCTTCTCCCGCTGCAGCCGCGTCGAGAGGAGCTCGCCGAGCTAAAAATTCGTGCATTCTTCTAGCGCTAGTAATGACATCGGTGGTGTCTTCCTCAGTAGCAGTTCATCAGCGGATGCGAGTCTTGGAACTTGAGGAAGAAATTGTTAACATTAGTGTTTCTTGTAATGGAAATGGAGTTGAGGGTTGGGAAGATGATCAACTTACTATGAATTCTGAAGGCAGGGCTTCTCGTTCTTTTTTAGGGAAAACTGATAGTAGGACGATTGCTTTGTACACGGTGATGTTGTCAACAGTGTTGCCTTTTATTTTATTCAGATATCTTGAGCGCATACCTTGCTTGAGCTCTTATTTGAAGGGGTCTAAGAATGAGGAAGAAGTTCCATTGAAGAAGAGGATAGCATATAGAGTGGATGTGTTCTTCTCTATGTATCCATATGCTAAGCTTTTGGCACTGCTTTTTGCTACTATACTTCTTATTGGATTTGGTGGATTGGCGCTGTATGCAGTGAGCGATAGCGGCCTCGCTGAGGCTCTCTGGCTTTCTTGGACTTTTGTTGCAGATTCTGGGAACCATGCTGAAATGGTTGGTTTGCACCCAAGAGTTGTCTCAGTATCAATCAGCTCAGGAGGCATGTTGATATTTGCCATGATGCTTGGGCTTGTGTCAGATGCAATTTCGGAGAAGGTTGATTCTTGGAGGAAGGGAAAGAGTGAGGTTATTGAGAAAAATCACATTCTAATCCTCGGTTGGAGTGACAAATTGGGGTCGCTTCTTAAGCAGCTAGCAATTGCAAATATGAGCATTGGTGGTGGAATAATAGTAGTTCTTGCAGAAAGAGACAAGGAAGAAATGGAGATGGATATATCAAAACTGGAATTTGATTTCATGGGAACATCTGTAATATGTAGGAGCGGTAGTCCGCTAATTTTAGCTGACTTGAAAAAGGTTTCAGTTTCCAAGGCACGTGCAATCATTGTTTTAGCATCTGATGAGAATGCAGATCAGAGTGATGCCCGAGCATTACGAGTTGTTCTTAGTCTTACTGGTGTTAAAGAGGGCTTAAGGGGTCATGTTGTGGTGGAGATGAGTGACTTGGACAATGAGCCCTTGGTGAAACTCGTTGGAGGAGAACTTATTGAAACAGTTGTTGCTCATGATGTGATTGGACGCTTGATGATACAGTGCGCTCTCCAACCTGGTCTTGCACAAATATGGGAGGATATTTTGGGGTTTGAGAATGCTGAATTTTACATCAAAAGGTGGCCTCAATTAGATGGCATGCGGTTTGAAGATGTACTGATTGCATTCACTGATGCTGTTCCATGTGGTGTTAAAGTAGCCGCAAATGGTGGAAAGATTATCATTAACCCCGAGGATGATTATGTTCTTAAAGAAGGCGATGAAATCCTTGTTATTGCCGAGGATGATGATACGTATGCACCTGGTTCCTTACCTGAGGTGCAACCTGGTTTCTTACCAAATGTATTTAGTCCTCCCAAATATCCAGAAAAGATCTTATTCTGTGGATGGAGGCGAGACATTGATGATATGATTATGGTGCTGGAGGCATTTCTTCCTCCTGGTTCTGAATTATGGATGTTCAATGATGTTCCAATAATGGAAAGAAAGGAAAAGCTGACAGACGGTGGGCTTGATATCTCAGGACTATCAAACATCACATTAGTCCACAAGGAGGGAAATGCTGTTATCCGTAGACATTTGGAAAGCCTTCCTTTGGAGACATTTGATTCTATTTTAATTCTTGCAGATGAGTCTGTTGAGGATTCTGTTGTTCATTCGGATTCAAGATCACTGGCAACACTTCTTCTTATTCGGGATATTCAGTCAAAGCGTCTTCCCTCTAAAGAAGAAAAATCAACAACTCTCAGGTATTCTGGTTTCTCTCACAGCTCCTGGATCCGGGAAATGCAGCAAGCTTCTGACAAATCAATTATTATAAGTGAGATTTTGGATTCAAGAACACGGAACCTTGTATCGGTGTCTAGGATCAGTGATTATGTCCTGTCAAATGAGCTTGTTAGCATGGCATTGGCCATGGTAGCTGAAGACAAGCAAATTAACCGTGTTCTTGAGGAGCTTTTTGCTGAAGAGGGAAATGAGCTTTGCATTCGTCCAGCAGAGTATTATCTATATGAGCAGGAGGAACTTTGTTTCTACGAAATTATGATAAGGGGCCGAGAGAGGCAGGAGATAGTGATCGGCTACCGTCTTGCCAACGCCGACCAGGCGATTATAAATCCTCCCCAAAAGATAAAGCGGAGAAAGTGGTCTCTTGACGATGTCTTTGTTGTTATTTCATTAGGCGATTGAAGCATGCTGAACCATGAAAGGTATATCCCATGTATTTGCTAGAATAGTAAAGAGTATAAACCTTAACATTTTTTACTAATGCACATTGTTGAGCCCTTCTATGTTAATTGAATTGTACATATTTTTAATCTCTTTGTATAGATTAGTTGTAAGGGATGTACATTTGTTGAGAGGTTTGATGGAGAAATTTCGAGAGGATTTTTATATGATAATTATTGATTTGGAAAAGATAATAAAACTTTTAGAAAAGTTCTTTAGAGAGCATTGGAAAGAACAGAAGTTTGTGTTGTTTATGTTCATGATAATAAAGATATACAAAACAAGGCAATTATATGTGC

Network for GWHGAAEX002806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06241.11	Castor_Poll_mid	573	670	2.60E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.980
SRP064423	SRR2545915	Juvenile tuber	12.790
SRP108465	SRR5643513	five period of Gastrodia elata	15.040
	SRR5643514	five period of Gastrodia elata	13.410
	SRR5643515	five period of Gastrodia elata	13.940
	SRR5643524	five period of Gastrodia elata	12.540
	SRR5643525	five period of Gastrodia elata	15.540
	SRR5643528	five period of Gastrodia elata	17.920
	SRR5643658	five period of Gastrodia elata	16.490
	SRR5643659	five period of Gastrodia elata	12.110
	SRR5643660	five period of Gastrodia elata	14.090
	SRR5643661	five period of Gastrodia elata	12.580
	SRR5643662	five period of Gastrodia elata	13.910
	SRR5643663	five period of Gastrodia elata	13.580
	SRR5643664	five period of Gastrodia elata	14.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.580
SRP279888	Gastro	Gastrodia elata tuber	17.91
	Juven	Juvenile tuber	25.34
	Mother_Gastro	Mother tuber of Gastrodia elata	22.63
	Mother_Juven	Mother tuber of Juvenile	34.09