Gene detail

Detail information of GWHGAAEX002809/evm.TU.scaffold_125.17

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2175	Protein predicted to be involved in carbohydrate metabolism
nr	gi\|743820342\|ref\|XP_010931755.1\|	PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3B-like isoform X1 [Elaeis guineensis]
trEMBL	tr\|W1P579\|W1P579_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN03083.1}
TAIR	AT3G06670	binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000122	982015	1071168	-

Transcript Sequence
>GWHTAAEX002809 GGTTTTATTTGTCCAAAGCTCATAACATTCCGTCGATTAAATTACACGAGGGCTAATTGTCGCGTGTGTTCAGCCGAGGACGACGCAAATTCAATTCTGCTAATTCTCCACTTTTTCTTCGTTTTCTCCACTGGGTGTTGTTACCAGTGCTTATTCATGGGCGCGCAGGCGAAGACAGCTGGCTCTGCTAATTCCCTGCAGCGTGTCAAGGTTTATCATTTGAACGAGCAGGGAAAATGGGATGACCAAGGAACTGGGCATGTCACTGTTGATTATTTGGAGAGGTCTGAGGATCAACTTGGCTTGATTGTCATTGATGAAGAAGACAATGACACCTTACTTTTGCACCGTATTTCTTCAGATGAAATATATCGACGACAAGAAGATACAATCATCTCTTGGAGAGATCCAGATATTTCCACAGAATTGGCTCTTAGCTTCCAAGAGGCTGCAGGATGCTCCTATATATGGGACAACATTTGCACTGTACAGCGAAATCTACATTTCAATAGCCTTAGTAATGAGTCATTTCAGGCTGTTAACAATGAGTTGAAAGATATTCCTCCTGTACAAGTAGCCAATCTCCCATTGATTTTGAAGGCTGTTGTTGAATGTGGAGTCACTGATCAGTTGCGTGTTACTGAGCTGATCTCCCAAGATGAAAGTTTCTTTCCTAAGTTGGTGCATCTTTTTAAACAGTACGACGGAACAGAGAACATGGAAACTCTTCACAATATATTCAAATTAGTTAAGGGGATCATTCTATTAAATAGCCAGCAAATCTTTGAGAAAATACTTGCAGATGAATTTATATTGGATATCATCGGGTGTCTTGAGTATGATCCTGAGGTCCCTAAAGCTCAAAATCATCGTGCATTTCTCAAACAGCATGTGGTTTTTAAGGAGGCAATCCCTATTAAGGATTCTGTAGTTCTTTCAAAGGTACACCAGACATACAGAATAGGCTATATAAAGGATGCCATTTTACCGAGAATACTGGATGAGGCGACTGCAGCAAGTCTTAACTCCATTATTCATGCAAATAATGCTGTTGTTATTTCTTTGTTGAAGGATGATGCTTCTTTTATTCAGGAATTATTTGCTAGGATGAGGTTAACTTCAACTTCTGCTGATTCTAAACGGGATATGGTGCTATTCTTACATGAGTTTTGTTCTCTAGCCAAGAGTTTACAGATGGTACAACAGTTACGACTTCTACGGGATCTTGCTAGTGAGGGCATATTTGATATAATTACGGATGTGCTAAAATCTCAGGATAGAAAGCTTGTCTCCATTGGGACAGAAATTCTTATACTTTTTCTTAGTCAAGATCCCAATCTTCTTAGATCACATGTCATTCAGCAAGAGGGAAATTCCCTCCTAGGCCTTTTGGTTCAAGGTATGATGACTGATTATGGAGAGGGCATGCATTGCCAATTTCTTGAGATTATACGTATTTTGGTGGATTCATATTCAATGTCTGGATCACAGAGGGACACTATCATTGAGATTTTCTTTGAAAAACATCTGGACCAGTTATTAGATGTGATAACGTCATCATGCCTCCCTAGAAACAATTCACATGCAGCTAGTAAATCATCCGAAATTGGTGGACGAGGTGCATGCAACTCTGCTACGAAGGCTGAAATTTTATCCAACGTTTGCGAGCTGTTGTGCTTCTGTATGCACCATTATACACACAAAATTAGGTGCAAATTCCTTAAGAGCAATGCTATAGAGAAAGTGCTAAGTTTGACGCAGAGGAGAGAAAAATTCCTGGTGGTGACTGCTGTTCGTTTTATGCGTACTGTTATCTCTCGAAATGATGAGCATCTTTTGCGTCACATAGCAAAAAACAATCTTTTGAAGTCAATTATTGAAGTTTTTGTTGAAAATGGAAATCGGTATAATATGCTGCACTCGGGTGTTCTAGATCTTCTTGAGTACATTCGCAAGGAAAATTCCAAGACATTGATCCTGTACATAGTTGATTCTTTCTGGGACAAATTGAAGAGGTTTGAGCATTTGAGTACTATTTTGGCCCTAAAAATCAAATATGAGCAGTCACTTGAAAATGGAGATTCAAAAACCATTGTCAATGTTGCGAACCCTCGAAAACGAATTGATGAACGAGGACTTGATAAGGAAGAAGAAGATTACTTCAACGCGGACAGTGATGAAGAAGACTCTGCATCAGCTCATTTGTCAAGTGCAGGAAATCATCATGCGTCAGCAGTTATGCCAAATGGAAGCAATTTGACCAAGCCTAATGGGCCTGCTGGAGGTGTTGGCCTTGTAGACTATGATGATGATGATGAAGATGATGAAGATTATAATCCTCCTCGCCGGCCTGACACTTCTGCTGTTGCTGATGAGGATGCCACTATGTCAAATTTATGCAGCCGACCAAAAGACATGCTATCTTCCTTTGTAGATGATGATGATGGCAAGGACTTGGGTTCTGATGCGCTGCTGAAAAAGCGCCGCCGTCTTGACCAACAGCAAAATTCACGTGAATTTAAGATTCATGTCGATAAAACAAACACACACGCACCTTCTTCTAACGGCGAATTAGCCCAACGTAACAACAGGGAAAGCGAGTGTTCACCAGGAAAAAAATCGAGTAATAACTCTGCATGTGCTCCTGACGATACCAGACTGTCAACAACAGAAGCACCTATCAGCAGCTCCTCGCAAGAGATTACCATTGGCAGTTCAGAGCCTTATTCTGTGAGATGA

Network for GWHGAAEX002809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04802.14	SMK-1	221	408	2.60E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17491	SMEK, PPP4R3	Glucagon signaling pathway	map04922
K17491	SMEK, PPP4R3	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.860
SRP064423	SRR2545915	Juvenile tuber	54.630
SRP108465	SRR5643513	five period of Gastrodia elata	28.770
	SRR5643514	five period of Gastrodia elata	28.430
	SRR5643515	five period of Gastrodia elata	31.270
	SRR5643524	five period of Gastrodia elata	29.320
	SRR5643525	five period of Gastrodia elata	35.730
	SRR5643528	five period of Gastrodia elata	26.300
	SRR5643658	five period of Gastrodia elata	37.210
	SRR5643659	five period of Gastrodia elata	32.270
	SRR5643660	five period of Gastrodia elata	38.230
	SRR5643661	five period of Gastrodia elata	30.700
	SRR5643662	five period of Gastrodia elata	31.270
	SRR5643663	five period of Gastrodia elata	36.130
	SRR5643664	five period of Gastrodia elata	35.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.180
SRP279888	Gastro	Gastrodia elata tuber	36.61
	Juven	Juvenile tuber	44.53
	Mother_Gastro	Mother tuber of Gastrodia elata	34.51
	Mother_Juven	Mother tuber of Juvenile	45.78