Gene detail

Detail information of GWHGAAEX002811/evm.TU.scaffold_125.19

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1049	6.00E-22	Polyadenylation factor I complex, subunit FIP1
nr	gi\|743783641\|ref\|XP_010921466.1\|	5.50E-42	PREDICTED: LOW QUALITY PROTEIN: FIP1[V]-like protein [Elaeis guineensis]
Swissprot	tr\|F4KDH9\|FIPS5_ARATH	4.00E-24	FIP1[V]-like protein {ECO:0000303\|PubMed:16282318}
trEMBL	tr\|A0A067EZW8\|A0A067EZW8_CITSI	1.00E-27	Uncharacterized protein {ECO:0000313\|EMBL:KDO59420.1}
TAIR	AT5G58040	6.00E-22	homolog of yeast FIP1 [V]

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000122	1308093	1349837	-

Transcript Sequence
>GWHTAAEX002811 GTCAATCTTTAAAACTGCTTACTTAGCTAGTAAGGAAATCATGGGGATGAATGCAATAATTAGAAAAATGGGAGAACTGGATGACTTCGGTGAGCTCTACGCCGACCTCGAGGACCGGGTGATTGCTGGCGTTTTGGCAGAGGCGGAAGTGGAGTATAAAGCCAATATCAATGAACATGGAGCTGCGTTTGAGAATGCTACTGTGGACAGTGTCCGCTGCACTGACAGTGAGGATGACCTCCATATAGTTTTAAACGAAGGAGATTACCAAAGTAAGTTACCTGCTGAAATCTTATCCGAAGGAAAGCACTCTGAGGATGATGATATAGATGACCTGATTATCATAACTGGCTCTAATTTTTCTGGGAAGGAGCCCACCTGGGCTGTGCCAGGACATTCAGCTGATGAGTCGCTGAGGGGGAATGGAGCCAGGGAAAATGCAACGAACAAAGGTCTTAAGAATTGGTCAAGGCATTGTTTGGCTGAATCTGCTGTATGTGCTCAGTCCACTTTTCGTGAAAGTGGTTACTGGAATAATTTGGCAATGCCACATTTCTTGGCAAACACCTCATATAATTCAAGCTTTCACCCGGCATTTCCAAATGGCCAGGATTTCTATCTGCTACGAAATAAGAGCATATTTGACATAGATGTTGAATCTTTTGAGTGTAAGCCGTGGAGGTTTAATGGGGCAGATATCACAAACTATTTCAACTTCGGGCTGGACGAGCAAGGGTGGAAAACCTATTGCAATCAACTGGCACAGTTTTGTCAGAACAAATTATCATTGCATGAATCTCCGAACAAGCCAAAAGGCCAAGCAATCCAGGTTGAAAGTGGAAATGGAAATCGAATTCCATCCATGGATATTAGAAGACCAAGGAATCGGGACTCTGATGTTGTGATTCAGATCTGCACAGCGATAGATAGAGAAACTCCAGTGGATGAGAATGGATCTAAGAGTGAATTATTTGTTAATTGCAAGAATGAACTCTGCAAAAGCTCATTCTCATCCGGGTATTGTTTTCTTAATTGGGGAGTGAATATCAATTATAATGAGTGTTTTCATTCATATATGAAGAAGCCATTTGACCCAAAGCATAATATGAATTGTGGTGGAGGCTGTCCTTCAAGAGACATGTCTTTGTCTAAATATGCTGTTACTGATGATCATTCTTCCAAAAAATCAAAACCTTTTGATTACAATGGTTCTTTTAAAGCATCTGAGAATGAAGTATGTTTGGAGAAAGCTCCCAGCCTTCAATGCATTCCCTTGAATTCAGATTCTTTATTAGAAGGGCACAACTTTTCTCATTGCTGTTCATCCAGTGAAACAGGAAGTGATACCAATAAAAAACAATGTACAGCAAGTAGAGGTAATTTTCATGATTCCTTTCTGCATGTGAACTATTGTCAACAAACAACGCCCTGCAAATCAATTGAGTCAGATCTTAGCTCAGATGATGGGGTGGCTTTTCTTCCTGAGCATATTGAGAAAAATGATGGTGAACACCTGACAAAGAATGGCAAAACTGTTGTCAGGCACTGGTATAATGAACCATATGAAAGGGGTCATTCAAATCAAAGAAGCAAAATTTCACTGAAGAACAATGCTTACTATAATGGTGGATACAAAGCCAATGCTGCTTTCATTGTACACACAGATGGCCATGATGAAGATCTTTCCCCTGTGAGAAAAAAGGACAAACGAAATGCTGCAAGGGAAGTTAGCACAAGGAGAAATGGTTGCTACATAAATCGAAGCTCACAACATTACAGTAGGTTCCCAGACATGGTTAATACAAACTACTTGCAATTAAGTTCAGGGAACATGTTTTGTTACAGCGAAAGGGGTTGCCACACCAGTAGAAGAGTAATTGAACATGATATGATAATGAAGTCCCATTATAATGCTGTGGAAGCTAAAGATCAACACAGAGAAAGAACTTTAGATGAATATAGAAAAAGATATTTAAATAAATATTATGGAAACTGTGCTCCTTACTTTAAAAAGCAAGGTGAAAACTCTAATGATAAACATGATAAGGTTTCCTGCAGTGCTGGAGAGTTAAGAAGGCTTCAAGAATCACATAGGCATGGCAAAACACTGCATGTGAACTCAGAAATGTCACATAAATATCCTTACAATCATGAAGGTTCATGGCTATGTAAGGGTGGGTTTCATCCTAGAATCCATGGAGAAGTCTATGAGGAAGATAAAAGTAGCTGGCTTGAGGATGACTTTCAAAAGAGTCAACTTCTCAGTGTTTCTAAACATGATAAAAGATGTACGAGTCACATTGAACATACACATACCAGGGTTCTTAAACCGCTCAACAAGCATGGTATAGTTTTAAATAAAAGATGCCACCCCTTTTCTAGATCGGGCTTTAATTTTGATGATGGTCATTTTTCTACTGAAGTAAGAACTCCATACACTAACGTCATTGCCTACAATGAGAGTACAAAAAGAAGTTTGGCCTTGCCAGAACTTTTAGCTAAAAAGGAGCGCAATATTACACATCAAGATTCATTCAGCCACAAATTGTATTGCCCCAATATTGTACATACTCAAAATGGTCCAGTTGATAATAATTCATTCATCAGACACACAAATTTTGACAATCATCATAACAATAGTGGAAATAAGTTATCTGCCAGAAGTTGCAAGGGTTCTGATTCTGGGGACATTGTTGGTCATTCAAAAAATTATGACAAAAATAAAATTTATTTGGATGATATTAGAACTACTGCCAGAAAGCATTTAAATGATTGGAAAGTAAAGACCAAAGAAGGCAGTTGCATCAGCTCCAGCAGTAGCAGCAGAAGTCATTGCAGCACTGACAGTGCCGCCTTTAAAGAATCAATGAATTTTGATCATATTGAAGAAACAGAAGAACTCGAAGAGGGCCAGCTGGTAGAAGGATCCAACATTCATGAAACTGCAGATGCAAAACGTAAATCTGATGAAATAAATCCAGCTCTAATACCTGGTGCATCAAATCCTGTAACCGATCCAACTGATCCAAGACCAAAGGAGCAGTTGTATGGTAGGTACAACAAGAACCATTTACTTGAGACCCTGGCAAAGATGGAAAAACGCCAAGAGCGATTCAAAAATCCAATTATTTTGAAGAAAGCAACGGAGCATTGTGGGCGCCCTGCTGCTGACATTGAAAAAGTCAAGCAGCAGCAGCAGCGGCCAGCACGAAAAAGGCTGTGGAGTGACACTTAGTTTTTGAAACACTCATCATTTTAGTACTGCTTTAATCAGAAACTTTTAAAAGCTGCTTCTTGTTAGACAACAATCTGCACAAAGCTATATCATTGCCTCCATCATCATAATCATTAGCGTTGTTCCGAGTTTCTATGGTCAGAAATTTTCAATTAGTGTAATTCTATGTAATGCACTTCGGGTCAGTTCACCCTATACTATTACATCAATGCATAGAATGGCACCCCTTTTTATCATTCTTTAGTGCTGCTGTCTTTTTTGCCTTATGATATGTGGGATGCTTGTGACTATTGCTCAGTACCTTTTTTTTGATGATTAAGAC

Network for GWHGAAEX002811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05182.12	Fip1	202	242	7.80E-17

Protein Sequence

>GWHPAAEX002811
MGMNAIIRKMGELDDFGELYADLEDRVIAGVLAEAEVEYKANINEHGAAFENATVDSVRCTDSEDDLHIVLNEGDYQSKLPAEILSEGKHSEDDDIDDLIIITGSNFSGKEPTWAVPGHSADESLRGNGARENATNKGLKNWSRHCLAESAVCAQSTFRESGYWNNLAMPHFLANTSYNSSFHPAFPNGQDFYLLRNKSIFDIDVESFECKPWRFNGADITNYFNFGLDEQGWKTYCNQLAQFCQNKLSLHESPNKPKGQAIQVESGNGNRIPSMDIRRPRNRDSDVVIQICTAIDRETPVDENGSKSELFVNCKNELCKSSFSSGYCFLNWGVNINYNECFHSYMKKPFDPKHNMNCGGGCPSRDMSLSKYAVTDDHSSKKSKPFDYNGSFKASENEVCLEKAPSLQCIPLNSDSLLEGHNFSHCCSSSETGSDTNKKQCTASRGNFHDSFLHVNYCQQTTPCKSIESDLSSDDGVAFLPEHIEKNDGEHLTKNGKTVVRHWYNEPYERGHSNQRSKISLKNNAYYNGGYKANAAFIVHTDGHDEDLSPVRKKDKRNAAREVSTRRNGCYINRSSQHYSRFPDMVNTNYLQLSSGNMFCYSERGCHTSRRVIEHDMIMKSHYNAVEAKDQHRERTLDEYRKRYLNKYYGNCAPYFKKQGENSNDKHDKVSCSAGELRRLQESHRHGKTLHVNSEMSHKYPYNHEGSWLCKGGFHPRIHGEVYEEDKSSWLEDDFQKSQLLSVSKHDKRCTSHIEHTHTRVLKPLNKHGIVLNKRCHPFSRSGFNFDDGHFSTEVRTPYTNVIAYNESTKRSLALPELLAKKERNITHQDSFSHKLYCPNIVHTQNGPVDNNSFIRHTNFDNHHNNSGNKLSARSCKGSDSGDIVGHSKNYDKNKIYLDDIRTTARKHLNDWKVKTKEGSCISSSSSSRSHCSTDSAAFKESMNFDHIEETEELEEGQLVEGSNIHETADAKRKSDEINPALIPGASNPVTDPTDPRPKEQLYGRYNKNHLLETLAKMEKRQERFKNPIILKKATEHCGRPAADIEKVKQQQQRPARKRLWSDT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.250
SRP064423	SRR2545915	Juvenile tuber	9.840
SRP108465	SRR5643513	five period of Gastrodia elata	6.550
	SRR5643514	five period of Gastrodia elata	7.570
	SRR5643515	five period of Gastrodia elata	5.880
	SRR5643524	five period of Gastrodia elata	6.820
	SRR5643525	five period of Gastrodia elata	7.820
	SRR5643528	five period of Gastrodia elata	5.900
	SRR5643658	five period of Gastrodia elata	7.350
	SRR5643659	five period of Gastrodia elata	7.580
	SRR5643660	five period of Gastrodia elata	7.310
	SRR5643661	five period of Gastrodia elata	6.850
	SRR5643662	five period of Gastrodia elata	7.150
	SRR5643663	five period of Gastrodia elata	8.050
	SRR5643664	five period of Gastrodia elata	7.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.990
SRP279888	Gastro	Gastrodia elata tuber	8.74
	Juven	Juvenile tuber	10.81
	Mother_Gastro	Mother tuber of Gastrodia elata	3.19
	Mother_Juven	Mother tuber of Juvenile	4.97