Gene detail

Detail information of GWHGAAEX002813/evm.TU.scaffold_125.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502744\|ref\|YP_001958461.1\|	4.00E-42	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG0192	0	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
nr	gi\|672152053\|ref\|XP_008797466.1\|	0	PREDICTED: serine/threonine-protein kinase pakF-like [Phoenix dactylifera]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	7.00E-110	Serine/threonine-protein kinase EDR1
trEMBL	tr\|M0T240\|M0T240_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P27150_001}
TAIR	AT3G06620	0	PAS domain-containing protein tyrosine kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000122	1418108	1478443	-

Transcript Sequence
>GWHTAAEX002813 TTGGAAGGATGATCGAGCCCACGAATCTAGTTCGCCATCAAATGCAGGGAGTAGAAAACAAACGCGACAGTGCAAGGGGAGAGAAAAATCCTCGAACTGAATCTAACTACAACTAGGAATGTGCTATCTCCCAACTCCGCCATTTTTCCCCCACCTCAAGATCATCCTCCGCACCATTTCTAAAGAAGCCTGAGTTTGGGTTTCTCATGGAAGCTCCAGCCGAGGAGCTCCTCAAGAAGCTCCAAGAACTGGAAGTTGGACAGTCGATGCTCAAGCAGGAGCTGTCCAAGCTGCTCCCCGGAGACAGAGGCGGCGAGCGTCGCCGGTCTCATTCGGTTTCGCCTCAGCGTTCATCGCCTTCTACATCGGCACGGCAACAAAACTTTCCTCATTCGTCGAGATTACGGAGAGAGAGCCACGGGACGAGCTCCTTAGCCGGGGTTAGAAGCGGGGTCGAGGTCGCCGCTGGCATCGGTCTTTCGGAAAAGCAGTATCCTAATATACTGCTGTCCATGGGGCAGTCAGTTCATATATTTGACCTTGATGGAAGAATTATCTATTGGAACCGATCTGCAGAACAGCTTTATGGTTACTATGCATCAGAAGCCCTTGGTAAGGATGCCATTGAGCTTATTGTTGATTCCCATGACTTCTGCGTTGCTAATAGCATAGTACACAGAATAAGAATGGGGGAAAGCTGGACAGGAAAGTTTCCAGTGAAAAATAAAAGGGGAGAGCGGTTTTTAGCAATTACTACTAACAGTCCATTCTATGATGACGATGACAGTTTGGTTGGCATCATATGTGTTTCCAGTGATTCCCGTTCTTTTCAGGAAGTGGCTTACTCAGGCTGTTTAAAACCCATATCTGTTCTCTCGGACAACAATTCCAATCATCCTAAGAAAAGTTCCACAAATAAAGGAAGTTCAGATTCTCAACAACCTTTTCAAGTTGGCATTGCTTCAAAAATATCAAATCTGGCCACAAAGGTGACCAGCAAAGTTCGCTCTCGGGTAAGGACCAATCAATGTAGCATGGATCGTGAAGGTGGAAATGCCGGTAGCCAACAATCGGATCATGAAGTAGTACATTCAGATCATAGGGAGGATGCCATGTCAAGTGGTACAAACACACCTAGAGGAGATGTAGCACCTTGTCTCTTTGGGCTATCTTCTGTTGCCAATGTGGATGAAAAGTCCCCTAGTAAAGTTTCTAAAGCAAGTCATGAGGAGACTGAAGGTTTATCTGGGATTCACAAGATCATAAGTTCAAAAGCAGAGGCATGGATTGCTAAAAAGGGGATTTCATGGCCCTGGAAGGGTTGTGAGCAAGATGGTAATGATATTAAGAATAGATTTACTTGGCCATGGGTGCACAATGATCAAGAACGTGATGTAAGTCATTCAAAAGGCTCTGAGTGCTTTGATAAATTAGATGAAAACAGCCGGTTTGGAAATAATGATGCATCTGGATCATGGTCATCTTTAAATGCTAATAGCACCAGTAGTGTTAGCAGCTGTGGAAGTACAAGCAGCAGTGCTCAACACAAGTTTGATTTAGAAACGGACAGTTTAGATTATGAGATTATATGGGAAGACCTAACAATTGGAGAGCAAATCGGTCAAGGTTCTTGTGGCACTGTATACCATGCTCTATGGTATGGCTCGGATGTTGCAGTGAAGGTATTCTCAAAACAAGAATATTCAGATGAAGTGTTACATTCTTTCCGACAGGAGGTGTTACTTATGAAGAGGCTACGACATCCCAATATACTTCTGTTCATGGGTGCAGTTTTGTCACCAGAACGTCTTTGTATTGTTTCTGAGTTTCTTCCACGTGGGAGTTTATTTCGTTTGCTTCAAAGAAACACAACGAAGCTTGACTGGAGGAGGCGTATACATATGGCATTGGATATTGCAAGAGGCGTGAATTATCTTCATCATTGCAATCCCCCTATTATTCATCGTGACTTGAAGTCATCCAATTTGCTGGTAGATAAAAATTGGACTGTGAAGGTTGGAGATTTTGGACTATCTCGTCTGAAGCATGAAACATACTTAACGACAAAAACTGGCAAGGGAACGCCACAATGGATGGCTCCAGAAGTTCTTCGCAATGAACCGTCAGATGAGAAGTCTGATGTGTACAGTTTTGGTGTCATTTTATGGGAACTTGTAACTGAGACAATTCCATGGGACAATCTCAATTCAATGCAGGTCATTGGTGCTGTAGGCTTCATGAATCAAAGGTTGGAACTGCCGAAAGAGTTGGACTCACGTTGGGTCTCAATCATCGAAAGCTGCTGGCTTATTGATCCCCAATGCCGACCATCATTTCAAGACTTGCTTGAGAGATTGAAAGACTTGCTGAGACATTATGCCTCCCAAAGGATTAACAAGCATTCTCCTCCTTCCAGCAACATTACTAAGAGAACATCTTTGGGCGAGAGCTTGCAATCATGACACATCAAAAGATCCAGAGCGGGATGCAAACATCAGATGCACAGATCAACCATGGAGGATGATCTGCTGTTGGCTTGATTAGATCCCTCAAGTTCAATCTCGGCTGCAATTAGTTATTTGCTGATGCATGTTGGGAAAATCTATTTGTTCATCGGCCTTCTGACTAAGTTCTTCAGCTGTTACTGCTACTAACGATTTGTTATGCGGGCTCAATAACATTCTTATGGAAACCTGAGGCCATTGATTTGTATCTGTAATGTATGTGCTTCGTTTTGTTATTTATGGTTGATTAAATTGAAGCGAATGTATCTATAAATATTTTCATTGATGTATAGCTGATGGTTTCTTCGTATGAAGACTGTTTTCAGGAGAGTCCTCTTTGTAGGTGATTGAAATTAAAGAATTTTTTGAGTACAATGCCCATGTGCCCTATTTGGATTAAGTAATGATTTATTAACTTGATGGGTAAGCAGAAAAGATATACAAATTTGATGGAAGTAATGAAAAATT

Network for GWHGAAEX002813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13426.6	PAS_9	109	204	7.10E-12
PF07714.16	Pkinase_Tyr	465	717	6.50E-65

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.600
SRP064423	SRR2545915	Juvenile tuber	28.700
SRP108465	SRR5643513	five period of Gastrodia elata	32.080
	SRR5643514	five period of Gastrodia elata	30.850
	SRR5643515	five period of Gastrodia elata	25.770
	SRR5643524	five period of Gastrodia elata	29.410
	SRR5643525	five period of Gastrodia elata	28.250
	SRR5643528	five period of Gastrodia elata	31.070
	SRR5643658	five period of Gastrodia elata	24.950
	SRR5643659	five period of Gastrodia elata	23.740
	SRR5643660	five period of Gastrodia elata	23.880
	SRR5643661	five period of Gastrodia elata	23.130
	SRR5643662	five period of Gastrodia elata	22.800
	SRR5643663	five period of Gastrodia elata	22.130
	SRR5643664	five period of Gastrodia elata	22.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.250
SRP279888	Gastro	Gastrodia elata tuber	21.24
	Juven	Juvenile tuber	44.76
	Mother_Gastro	Mother tuber of Gastrodia elata	33.62
	Mother_Juven	Mother tuber of Juvenile	32.85