Detail information of GWHGAAEX002815/evm.TU.scaffold_125.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428306546|ref|YP_007143371.1| | 0 | translation elongation factor Tu [Crinalium epipsammum PCC 9333] |
| KOG | KOG0460 | 0 | Mitochondrial translation elongation factor Tu |
| nr | gi|356513781|ref|XP_003525588.1| | 0 | PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] |
| Swissprot | tr|P46280|EFTU2_SOYBN | 0 | Elongation factor Tu, chloroplastic (Precursor) |
| trEMBL | tr|K7KMT9|K7KMT9_SOYBN | 0 | Elongation factor Tu {ECO:0000256|RuleBase:RU004061} |
| TAIR | AT4G20360 | 0 | RAB GTPase homolog E1B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000122 | 1719027 | 1720938 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002815
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00009.26 | GTP_EFTU | 64 | 265 | 4.90E-56 |
| PF03144.24 | GTP_EFTU_D2 | 289 | 357 | 6.30E-16 |
| PF03143.16 | GTP_EFTU_D3 | 362 | 461 | 2.30E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02358 | tuf, TUFM | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006414 | Biological Process | translational elongation |
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0003746 | Molecular Function | translation elongation factor activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.380 |
| SRR2545915 | Juvenile tuber | 6.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.320 |
| SRR5643514 | five period of Gastrodia elata | 12.070 | |
| SRR5643515 | five period of Gastrodia elata | 15.560 | |
| SRR5643524 | five period of Gastrodia elata | 10.970 | |
| SRR5643525 | five period of Gastrodia elata | 11.350 | |
| SRR5643528 | five period of Gastrodia elata | 16.480 | |
| SRR5643658 | five period of Gastrodia elata | 6.290 | |
| SRR5643659 | five period of Gastrodia elata | 18.780 | |
| SRR5643660 | five period of Gastrodia elata | 21.100 | |
| SRR5643661 | five period of Gastrodia elata | 22.460 | |
| SRR5643662 | five period of Gastrodia elata | 30.080 | |
| SRR5643663 | five period of Gastrodia elata | 25.800 | |
| SRR5643664 | five period of Gastrodia elata | 26.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.80 |
| Juven | Juvenile tuber | 7.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.75 | |
| Mother_Juven | Mother tuber of Juvenile | 6.51 |