Detail information of GWHGAAEX002821/evm.TU.scaffold_125.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479149282|ref|YP_007779711.1| | 4.00E-155 | methionine adenosyltransferase [Roseburia intestinalis XB6B4] |
| KOG | KOG1506 | 0 | S-adenosylmethionine synthetase |
| nr | gi|695006094|ref|XP_009389524.1| | 0 | PREDICTED: S-adenosylmethionine synthase 5 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|A9PEK8|METK3_POPTR | 0 | S-adenosylmethionine synthase 3 |
| trEMBL | tr|M0S638|M0S638_MUSAM | 0 | S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541} |
| TAIR | AT1G02500 | 0 | S-adenosylmethionine synthetase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000122 | 1932118 | 1934523 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002821
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00438.19 | S-AdoMet_synt_N | 5 | 102 | 9.60E-43 |
| PF02772.15 | S-AdoMet_synt_M | 119 | 239 | 8.00E-46 |
| PF02773.15 | S-AdoMet_synt_C | 241 | 382 | 2.80E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00789 | metK | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006556 | Biological Process | S-adenosylmethionine biosynthetic process |
| GO:0004478 | Molecular Function | methionine adenosyltransferase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 434.440 |
| SRR2545915 | Juvenile tuber | 326.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 486.590 |
| SRR5643514 | five period of Gastrodia elata | 381.810 | |
| SRR5643515 | five period of Gastrodia elata | 1355.420 | |
| SRR5643524 | five period of Gastrodia elata | 511.450 | |
| SRR5643525 | five period of Gastrodia elata | 4374.370 | |
| SRR5643528 | five period of Gastrodia elata | 5126.390 | |
| SRR5643658 | five period of Gastrodia elata | 7163.530 | |
| SRR5643659 | five period of Gastrodia elata | 745.730 | |
| SRR5643660 | five period of Gastrodia elata | 436.250 | |
| SRR5643661 | five period of Gastrodia elata | 818.500 | |
| SRR5643662 | five period of Gastrodia elata | 1108.630 | |
| SRR5643663 | five period of Gastrodia elata | 766.410 | |
| SRR5643664 | five period of Gastrodia elata | 979.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 346.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 317.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 315.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 227.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 232.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 254.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 535.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 320.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 475.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 801.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 405.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 405.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 487.27 |
| Juven | Juvenile tuber | 106.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4,435.09 | |
| Mother_Juven | Mother tuber of Juvenile | 3,573.94 |