Gene detail

Detail information of GWHGAAEX002823/evm.TU.scaffold_125.35

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427723124\|ref\|YP_007070401.1\|	6.00E-11	WD40 repeat-containing protein [Leptolyngbya sp. PCC 7376]
KOG	KOG0974	0	WD-repeat protein WDR6, WD repeat superfamily
nr	gi\|672180428\|ref\|XP_008810407.1\|	0	PREDICTED: WD repeat-containing protein 6 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	9.00E-08	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|M0SQG3\|M0SQG3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P20000_001}
TAIR	AT4G01860	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000122	2063028	2128588	+

Transcript Sequence
>GWHTAAEX002823 ATGCAAGCCTTAGCAAACAGAATGCTTGACGAACGGCTTCTGAATCCTCACGCAACGAACGGGATGCGAGTGAGCCATAATGTTTTGCGTTTTTCTCATTCAATATTTGAAGTTTCATCTTTTAAACGGCCTCTGGCTATACTTCTCGGTACCCTCATCGGCCCTCCGCTGGCTGTTCATTTTTTCAGCACACCTGTAATGGATGGCGCCGGCCGGCCCTTCCTTTGCCGCGGCCCTTATATAGGAGAGATCTCTGCCCTTTCCTTCTTCCCTCTTCCTTCGCACCTCTCCTCTCTCCCACTTCTCCTTGCTGGGACGGGATCAGCGCTCCTACTATACAACCTTGAGATTGGAATTCTGCTACATTCTTCCTACGTGTTCGACGGTGTCCGCGTCCACGGTATATCCGTTCGATCTTACTCCGATCCTTTGATAGCTGTCTTTGGGGAGAAGAAGGTCAAGCTGTTTACTGTTCTTGTGGACCCTAATCCGTTGCATGCGAGGATTGAGTTTGTGATTCAATTGCCTCGCTTTGAACATTGGGTTTTGGACGTCAAGTTTATGAAAAACGACGGTTACCTTGCACTTGGGCTTAGTGATAACTCTGTGGCTCTTTGGGATGTTGATAATTCAACTTTAGCGGCGAGGTTTAAATATGCAGAGAGGTGCCTTTTGTACTCTATGCGAATATGGGGTGAGAGCTTGGAGAGTCTACAGTTGGCTTCTGGTACCATTTACAATGAGGTCATTGTTTGGAGGCTTAAATGTCAGAACCTGCTTGTATCTTCTTTTAAATCCATCAACAAATGCACAAATCACGACGAGGGCACTCAATCTGGGCATCAACAAATCTTGCCTGTTCATTTGAGCAGACTCTTTGGCCATGAGGGCTCGATTTCTCGTATTGCATGGTCTAATGATGGATCTAAATTGATTTCTGTCTCTGATGATCGAAGTGCTCGCATTTGGATGTCCTATAGCAATGGACTAAACTATTGTGATGCTGAGGATAAACTCGGGAGTCTTGCCTCAAACAAACTTGTACTTTTTGGACATAGTGCTAGAATTTGGGACTGCCATATATCTGATTCTCTTATTATCACAGCTGGTGAGGACTGCACATGTCGAGTGTGGGATTTGGATGGTAACCTGATATTGATATTCAAAGAACACATTGGGAGAGGCATATGGCGATGCTTATTTGATGAAAGCTCATCACTTCTTGTCACAGCGGGGTTTGACTCTGCAATAAAAGTTCATCGGGTGTGCTTTCCTTCTGCTAGAGAATTAACAAGAGATGATAGGTTGCTAAATGATGTGAAAGTTGAAAGAGAAACTTTTGCTATTGCTGCTCCTCAAGTCAAAAGACATCAAGGTCCCGTGGACAGCAAAAGTGAATATGTACGCTGCTTGTGTTTTGCTCAAGAAAATGTCCTCTATGTTGCCACTAACAGTGGTTTACTTTATCATGTTGAGCTTTGTAAAGCTGGGGCTGTAAAATGGACTCAACTCGCACAAGTCAGTAAAGAATCACCAATTATTTGCATGGATTTAATGTCCTTAAAATCATGTAGCTCTTCATTGTTTTTGGAGTACGCCATTGCTATTGGTGATGGCTTGGGAAATGCTACTGTCATGAAGCTGATTGGTGGAAAATCAACATTTTCTATAGCTTCCTCTTTTGCATGGACAGCTGAAAAGAAGAGGCAACTGCTAGGAATTTTTTGGTGCAAGTCACTTTATTGTCACCATATTTTTACTGTTGATCCTAGTGGGACAATAAAACTTTGGAAAATAAACAATGCCTTAGACACTGGCATCAATGAAAACAATTTGAAACGCTGGGTCTCTCTCATTGCTGAGTTCACCTCATATTTTGGGGCACGGATCATGTGTCTACATGCAGCAGTTAAAGAAGAGGTTTTGGTTTGTGGTGATCAACGTGGTAATCTTACCATATATCCCTTGTCAGAAGACACAATGAGGGCTGACTCTGGTGAAATGGTGAAAAGGATTTCCATAATTAACCGGTTTAAAGGAGCGCATGGAATATCTAATGTAACGAGCCTCAATGTTTCAATGTTAGGTTTCAATCAAGTGGAAATACGGACAACAGGAGGTGATGGCTGCATTTGCTATTTCAAATATGATAAGAGCTTAGAAGTACTGGAATTTGTTGGAATGAAGCGATTGAAAGAGTTGAGCACAGTCCAATCTGTTATACAGTCTCCAATGGGTGAATATGCATTAGGATTTACATCTGCAGATTTTATTATGTGGAACCTAGCAATTGAAACCAAGATGTCAGAAATTTCTTGCGGGGGATGGCGGCGCCCTTATTCTTATCATCTGGGCCCTGCTCCCAATTTTCAATTCTGCTTTGCGTTTGTTAAGGATCTTAACATCCATATACATAGGTGGTGTGTGCCTGCTCATGAAAGACAGCAACACATGCGGGTTTTGCACCTGCAATATCATGGAAGAGAGATACATACGTTGTGTTTCATATCATTTTCTTTGCAATCAAATCCAGCAAAACTTTGCGATAGATTTATTGCAACAGGTTGCGAAGATGGAACTGTAAGATTAACAAGGTGCACACCTTTGGGAAGAGAAAGTTGCTATGACTCAACACTACTTGGCGAGCATATTGGTGGATCAGCGGTTAGATCTATATGCTTCACATCAAAGATATTTTTAATTGGGTCAGACCAAACTTGCTGCACTTGGAATGATGTTTTAGATTGCAATAAACATGAGCCTCTCCTGCTTATATCAGCTGGTGCCAAGCAAGTTTTGACTTCATGGATTTTGCAATATCAAAGTGTAGATGTTAATGAGAAATCTGTTAATGTAAGAGAATCTGAGGATATATGTTATTCTTCTGGCTGTAAACGAATCCCTATAACTTTTCAGTGGCTTGCAACTGATAGCCCATCAAAATATGCCAATCAGTTGAGAAGAGTGGAAACATTGCCGGAAATAAGAAATGCTTCTGCAGCCATCTCTGGTGCAAAATCTGAAGCATCTATAGGTGAAAGTAAAGAGGAAAGCTCTCAGTCTGAAGCCGTTAATTTACATGAAAATGATTGGAGATATCTTGCTGTGACAGCATTTTTGGTGAAACATGTTGATAGCAAGTTTACAACTTGTTTCATTGTTGTTGCTTGTTCGGATGGAACATTGTCTCTAAAGGCTCTTCTATTACCTTTTCGCTTGTGGTTTGTTGTAGCTCTATTGGTGCCAGAGTCATCTCCAGTTCTGGTCCTAAAACATGTTGCAATTCCTCTTTGTACTGGTGCTTATGGTAATATTTCAACTGGTTATGCACATATTGTTTTAAGTGGATCTACAGATGGTGCCATCTCTTTTTGGGATCTCACTGAAGTGATAGAGAATTTTATGCAGCTTGTTTTGGAATATCAGCCTCAAATGCTTGTTGACTGCCAAGGAAGGCCTAGAACAGGCAGAGGAAGCCAGGGTGGGCGGTGGTGGAAACATTTGCAGGGCCAATCTGGTGACACGAAAATGAGATGTCCTTTAAGCAAAAATAAATTTGGCCATTGTACGAGTTCCACAAGCTCTGAGAATATTGTTCCCAATTCAATGGGGCAAGGAAGCCATCATATGCGTGATCAATTAGATAATTACCACCCTGGAAGTTCAGATTCCTTCTCTTCACCTGATGGGTATTGCAGGACCCCTTTCGCAACACAAAAACTGCTACCTCTACATGTCCTCACTTCAGTTCACCAATCAGGTGTCAATTGCCTTCATGTCTCAGAAATGAGGGAATCTAATGACAAATTAGGGCGTGTTTATTGTGTTGTAAGTGGTGGGGATGATCAGGCAGTGCACTGCATTTTCTTTCAGGTAGGTGCAACAATGAAAAACTTAGTATCAAGCTGTAGTCAAACTGCCAATTCTACAAAACATATGCAGAATGCTGATCATTCTCAGTCATCAGGATCAAGCTTCATAGAAAAGCGTTCTTTTAACAATATAAGCAATTTTTATCACCTAACAATTCTTCAAAAGCAAAGTGTCAACTCGGCTCATAGCTCATCAGTGAAAGGCATTTGGACGGATGGCATTTGGATTTTTTCTACGGGTCTTGATCAACGGATTCGATGCTGGCAGATTGGATTCAGTAAAAGGCTGGTTGAACGTGCTCATTTGATCACAAGCGTGCCTGAGCCAGAATCCCTTGATGTACTCGCCCCTTCTGATGACAGAAAGATATACCAAATTGCTGTAGCTGGAAGGGGCATGCAGATCATTGATTTCTTCGCACCAAGTGGTGAAGACCTGTAAATCCCGCATTTTATTTAGCAAGTTTTGTTTTTCTTTTTTTTTTGGGAAATCTGTCATTCATTTCGTCCTGTTTAGTTAAAAATAGGCTCATCTTTCTCCAGTTAAATATTCATATGACAGCCGCGATTGTTAAGCGTAGTGGTGGTTGGTAATCATGGTCGAGCGGGGCACTGATGTTGCCTTTTATTTGTTATGGATTCTATATTTTATAAAACGAATAATTATTGTAATACATTCCCAACATTCTCATGTGGATTTTTATTATATTCAATTCAGCACTTTAATATG

Network for GWHGAAEX002823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	292	323	0.00029
PF00400.31	WD40	349	379	0.04

Protein Sequence

>GWHPAAEX002823
MQALANRMLDERLLNPHATNGMRVSHNVLRFSHSIFEVSSFKRPLAILLGTLIGPPLAVHFFSTPVMDGAGRPFLCRGPYIGEISALSFFPLPSHLSSLPLLLAGTGSALLLYNLEIGILLHSSYVFDGVRVHGISVRSYSDPLIAVFGEKKVKLFTVLVDPNPLHARIEFVIQLPRFEHWVLDVKFMKNDGYLALGLSDNSVALWDVDNSTLAARFKYAERCLLYSMRIWGESLESLQLASGTIYNEVIVWRLKCQNLLVSSFKSINKCTNHDEGTQSGHQQILPVHLSRLFGHEGSISRIAWSNDGSKLISVSDDRSARIWMSYSNGLNYCDAEDKLGSLASNKLVLFGHSARIWDCHISDSLIITAGEDCTCRVWDLDGNLILIFKEHIGRGIWRCLFDESSSLLVTAGFDSAIKVHRVCFPSARELTRDDRLLNDVKVERETFAIAAPQVKRHQGPVDSKSEYVRCLCFAQENVLYVATNSGLLYHVELCKAGAVKWTQLAQVSKESPIICMDLMSLKSCSSSLFLEYAIAIGDGLGNATVMKLIGGKSTFSIASSFAWTAEKKRQLLGIFWCKSLYCHHIFTVDPSGTIKLWKINNALDTGINENNLKRWVSLIAEFTSYFGARIMCLHAAVKEEVLVCGDQRGNLTIYPLSEDTMRADSGEMVKRISIINRFKGAHGISNVTSLNVSMLGFNQVEIRTTGGDGCICYFKYDKSLEVLEFVGMKRLKELSTVQSVIQSPMGEYALGFTSADFIMWNLAIETKMSEISCGGWRRPYSYHLGPAPNFQFCFAFVKDLNIHIHRWCVPAHERQQHMRVLHLQYHGREIHTLCFISFSLQSNPAKLCDRFIATGCEDGTVRLTRCTPLGRESCYDSTLLGEHIGGSAVRSICFTSKIFLIGSDQTCCTWNDVLDCNKHEPLLLISAGAKQVLTSWILQYQSVDVNEKSVNVRESEDICYSSGCKRIPITFQWLATDSPSKYANQLRRVETLPEIRNASAAISGAKSEASIGESKEESSQSEAVNLHENDWRYLAVTAFLVKHVDSKFTTCFIVVACSDGTLSLKALLLPFRLWFVVALLVPESSPVLVLKHVAIPLCTGAYGNISTGYAHIVLSGSTDGAISFWDLTEVIENFMQLVLEYQPQMLVDCQGRPRTGRGSQGGRWWKHLQGQSGDTKMRCPLSKNKFGHCTSSTSSENIVPNSMGQGSHHMRDQLDNYHPGSSDSFSSPDGYCRTPFATQKLLPLHVLTSVHQSGVNCLHVSEMRESNDKLGRVYCVVSGGDDQAVHCIFFQVGATMKNLVSSCSQTANSTKHMQNADHSQSSGSSFIEKRSFNNISNFYHLTILQKQSVNSAHSSSVKGIWTDGIWIFSTGLDQRIRCWQIGFSKRLVERAHLITSVPEPESLDVLAPSDDRKIYQIAVAGRGMQIIDFFAPSGEDL

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.580
SRP064423	SRR2545915	Juvenile tuber	4.400
SRP108465	SRR5643513	five period of Gastrodia elata	4.440
	SRR5643514	five period of Gastrodia elata	3.800
	SRR5643515	five period of Gastrodia elata	4.400
	SRR5643524	five period of Gastrodia elata	3.910
	SRR5643525	five period of Gastrodia elata	2.430
	SRR5643528	five period of Gastrodia elata	1.880
	SRR5643658	five period of Gastrodia elata	2.400
	SRR5643659	five period of Gastrodia elata	4.720
	SRR5643660	five period of Gastrodia elata	4.570
	SRR5643661	five period of Gastrodia elata	3.970
	SRR5643662	five period of Gastrodia elata	3.430
	SRR5643663	five period of Gastrodia elata	4.350
	SRR5643664	five period of Gastrodia elata	3.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.470
SRP279888	Gastro	Gastrodia elata tuber	6.56
	Juven	Juvenile tuber	8.40
	Mother_Gastro	Mother tuber of Gastrodia elata	6.91
	Mother_Juven	Mother tuber of Juvenile	8.46