Gene detail

Detail information of GWHGAAEX002838/evm.TU.scaffold_126.3

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1303	Amino acid transporters
nr	gi\|567886358\|ref\|XP_006435701.1\|	hypothetical protein CICLE_v10031413mg [Citrus clementina]
Swissprot	tr\|Q5N892\|LAX1_ORYSJ	Auxin transporter-like protein 1
trEMBL	tr\|V4TGU8\|V4TGU8_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR48941.1}
TAIR	AT5G01240	like AUXIN RESISTANT 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000119	276428	362649	+

Transcript Sequence
>GWHTAAEX002838 CTCGGAAGGAATTCGTATCACATGCACTAAAATCTATTCCTGGCGTCACTGCTCTGCTTAACGGCTCTGAACCAAGCAAAGTAATTTTGCTTAAATCATAAAGCCGAGCGAAGACCAAATGTGCCAGTACAGCTGTTTCTAGAAATTTCCCCTCTTATATAGTAAAACCAAGCCATCCGCCTAGCGTGCTTAATACAGAGCACCTCAGCTATCATGGAGGCGGAGGAGGCCATCGTGACGCTAAGCCAGACGGAGAAAGAGGCCACAGGAAAAATAGGCATGAAGAGTCTCCTCTGGCACGGGGGATCCGTCTACGATGCTTGGTTCAGCTGTGCGTCCAACCAAGTGGCTCAGGTGCTTCTCACCCTTCCCTACTCTTTCTCTCAGATGGGCATGGCTTCGGGAGTCGCACTTCAGGTTTTCTATGGCTTGATGGGAAGCTGGACTGCCTATCTCATCAGCGTCCTCTATCTCGAGTATCGAACCCGCAAGGAGAAGGAGAACGTCTGCTTCAAAAACCACGTTATTCAATGGTTTGAGGTATTGGATGGGCTGCTCGGGCCTTATTGGAAGGCCGTCGGTCTTGCCTTCAACTGCACCTTCCTCCTCTTCGGTTCTGTCATTCAGCTGATCGGCTGCGCAAGCAACATATACTACATAAATGATCGGCTAGACAAGAGGACATGGACGTATATATTCGGGGCATGCTGCGCCAGCACAGTGTTCATACCCTCCTTCCACAATTACAGAATATGGTCCTTCCTCGGCCTCGGCATGACCACTTTCACCGCCTGGTTTCTCACCATAGCTGCCTTCCTACATGGCCAAGAATTTGGAGTGACTCATAGTGGGCCAGCAAAGATGGTGCTCTACTTCACTGGTGCCACCAATATCCTATACACATTTGGGGGGCATGCCGTCACCGTAGAGATCATGCACGCCATGTGGAAGCCCCAAAAGTTCAAGTGCGTCTACTTGGTGGCAACCCTGTATGTGTTCACGCTGACGCTGCCATCCGCAGCGGCCATGTACTGGGCGTTCGGCGACAAGTTGCTGGACCACTCCAACGCCATTTCGCTCCTGCAAAAGACGCGGTGGCGAGACAGCGCGGTGGTGCTGATGCTGATGCACCAGTTCATCACCTTCGGCTTTGCCTGCACACCTCTGTACTTCGTATGGGAGAAGGCGATAGGTGCGCATGGCACAAGCAGCGCCGCCCTCCGCGCCTTCGTCCGACTCCCGGTCGTCGTTCCCATCTGGTTTCTCGCTGTCATCTTCCCCTTCTTCGGCCCGATCAACTCTGCCGTCGGCGCGTTGCTCGTCAGCTTCACTGTCTACGTCATACCCTGCCTTGCCCACATGATCACGTACTGCCGCGCTTCTTCCCGCAAGAGTGCAGCCGAGAAGCCGCCATTCTTCATGCTGGGCTGGACGGGGATGTACTTGGTGAACACGTTTGTGGTGGTGTGGGTGCTGGTGGTTGGGTTTGGGTTTGGTGGATGGGCCAGCATCACCAACTTCATCAACCAGATTGACTCTTTCGGTCTGTTCGCCAAGTGCTACCAGTGCCCAAAGCCTCTTCCTCTCTCTTAACCATCTATCTGGCCGGCTCAAATATTTAAAACGTTTATTGGGTTGCCTTTGGATGAAATCTGCCTTCCTTTTACACTACCTATGGTTTAGTAACTTTGGAGAAGTGTGAACAAATGCTCGTTTGAAGCTAAAGAAAATGCAATGTTCTTAAGAAGCACATCAACGAGCTATCAATATCCACACACAAAGCTTAATCAAAAAATGCACTCATACAAAAAACTAGTTTTTTAGATGATTTTAATGAGTAGTGGCAAAGTGGTACATAGTATAAATAAGATGACATAAAGTAATGGCGAGTAAAATTACATATTCTCATTACTTTATAGCCAATCATGTGCAATTTGCAGTAGATTCACCTTTTCCAACGCCAAATGTTCTATTATCATGAATTTGTCTATTTGATCATCAGTAAAGGATATAGCTTATGTGATTTAGCTCAGTCTAGAAATTCTACATGTATCTTTTTCTTTGTGTACCACTTAGCCTTAGAAATTGGTTCCATCATACAATCAATTCTATATTTCATCATTGCCAAGGTTCTTTGCTGCCTAATGCATGGCTCGTTCCTTATAGCATCATTTCATCCTCCCCTGATAACGTAAGAGATTGATTAGTTTCAAATTCTCTACATTAGCGACAAAGTAATAACACCTATGGAGCTACAAACATACATATTATCATCTTCATGACTTCGAAAGGTCCATGCTCAAGTGGTTTCTACTTTTGCAACTACACGAAGTCATCTATATAGAGCAAATTCTTTACCATGTGCTTGTCATGTTGATCTAATACTTTTGCATCCTTGTTAATTGCTTGTTAACCTATATTGAAT

Network for GWHGAAEX002838

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	29	422	1.90E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13946	AUX1, LAX	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	61.250
SRP064423	SRR2545915	Juvenile tuber	29.100
SRP108465	SRR5643513	five period of Gastrodia elata	16.500
	SRR5643514	five period of Gastrodia elata	26.000
	SRR5643515	five period of Gastrodia elata	15.620
	SRR5643524	five period of Gastrodia elata	22.490
	SRR5643525	five period of Gastrodia elata	943.420
	SRR5643528	five period of Gastrodia elata	420.420
	SRR5643658	five period of Gastrodia elata	847.030
	SRR5643659	five period of Gastrodia elata	29.120
	SRR5643660	five period of Gastrodia elata	38.730
	SRR5643661	five period of Gastrodia elata	25.250
	SRR5643662	five period of Gastrodia elata	44.210
	SRR5643663	five period of Gastrodia elata	119.560
	SRR5643664	five period of Gastrodia elata	69.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.860
SRP279888	Gastro	Gastrodia elata tuber	27.14
	Juven	Juvenile tuber	14.10
	Mother_Gastro	Mother tuber of Gastrodia elata	3.15
	Mother_Juven	Mother tuber of Juvenile	4.79