Detail information of GWHGAAEX002846/evm.TU.scaffold_126.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29357.00E-103Ataxin 3/Josephin
nrgi|672158432|ref|XP_008798957.1|6.33E-130PREDICTED: ataxin-3 homolog [Phoenix dactylifera]
Swissprottr|Q8LQ36|ATX3_ORYSJ3.00E-119Putative ataxin-3 homolog
trEMBLtr|V4SZ47|V4SZ47_9ROSI1.00E-127Uncharacterized protein {ECO:0000313|EMBL:ESR42516.1}
TAIRAT3G541307.00E-103Josephin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011927438352767787-
Transcript Sequence

Network for GWHGAAEX002846

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02099.16Josephin151702.10E-47
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJosephin

KEGG pathway

KO Enzyme pathway mapID
K11863ATXN3, MJD Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0016579Biological Processprotein deubiquitination
GO:0004843Molecular Functionthiol-dependent ubiquitin-specific protease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.430
SRR2545915Juvenile tuber14.350
SRP108465SRR5643513five period of Gastrodia elata19.890
SRR5643514five period of Gastrodia elata17.810
SRR5643515five period of Gastrodia elata20.700
SRR5643524five period of Gastrodia elata15.460
SRR5643525five period of Gastrodia elata21.730
SRR5643528five period of Gastrodia elata29.180
SRR5643658five period of Gastrodia elata20.390
SRR5643659five period of Gastrodia elata34.190
SRR5643660five period of Gastrodia elata36.580
SRR5643661five period of Gastrodia elata38.010
SRR5643662five period of Gastrodia elata34.460
SRR5643663five period of Gastrodia elata38.180
SRR5643664five period of Gastrodia elata26.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.650
SRR6049655Rhizomagastrodiae_C368-T10_good_111.250
SRR6049656Rhizomagastrodiae_C368-T07_good_118.140
SRR6049657Rhizomagastrodiae_C368-T07_good_112.390
SRR6049658Rhizomagastrodiae_C368-T04_good_111.930
SRR6049659Rhizomagastrodiae_C368-T04_good_110.270
SRR6049660Rhizomagastrodiae_C368-T01_good_113.030
SRR6049661Rhizomagastrodiae_C368-T04_good_113.180
SRR6049662Rhizomagastrodiae_C368-T01_good_122.340
SRR6049663Rhizomagastrodiae_C368-T01_good_117.110
SRR6049664Rhizomagastrodiae_C368-T10_good_123.330
SRR6049665Rhizomagastrodiae_C368-T10_good_123.330
SRP279888GastroGastrodia elata tuber 40.94
JuvenJuvenile tuber20.56
Mother_GastroMother tuber of Gastrodia elata 23.23
Mother_JuvenMother tuber of Juvenile 16.48