Detail information of GWHGAAEX002852/evm.TU.scaffold_127.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24341.00E-129RNA polymerase I transcription factor
nrgi|743767254|ref|XP_010913884.1|0PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Elaeis guineensis]
trEMBLtr|M0S1D0|M0S1D0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P19720_001}
TAIRAT1G305901.00E-129RNA polymerase I specific transcription initiation factor RRN3 protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000141317411319285-
Transcript Sequence

Network for GWHGAAEX002852

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05327.10RRN3265398.50E-107
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.820
SRR2545915Juvenile tuber27.680
SRP108465SRR5643513five period of Gastrodia elata25.840
SRR5643514five period of Gastrodia elata24.320
SRR5643515five period of Gastrodia elata32.270
SRR5643524five period of Gastrodia elata26.630
SRR5643525five period of Gastrodia elata16.360
SRR5643528five period of Gastrodia elata19.790
SRR5643658five period of Gastrodia elata11.320
SRR5643659five period of Gastrodia elata42.700
SRR5643660five period of Gastrodia elata43.470
SRR5643661five period of Gastrodia elata40.830
SRR5643662five period of Gastrodia elata54.990
SRR5643663five period of Gastrodia elata54.630
SRR5643664five period of Gastrodia elata42.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.230
SRR6049655Rhizomagastrodiae_C368-T10_good_120.820
SRR6049656Rhizomagastrodiae_C368-T07_good_129.680
SRR6049657Rhizomagastrodiae_C368-T07_good_122.190
SRR6049658Rhizomagastrodiae_C368-T04_good_121.950
SRR6049659Rhizomagastrodiae_C368-T04_good_122.110
SRR6049660Rhizomagastrodiae_C368-T01_good_123.910
SRR6049661Rhizomagastrodiae_C368-T04_good_125.150
SRR6049662Rhizomagastrodiae_C368-T01_good_138.130
SRR6049663Rhizomagastrodiae_C368-T01_good_136.590
SRR6049664Rhizomagastrodiae_C368-T10_good_129.150
SRR6049665Rhizomagastrodiae_C368-T10_good_129.150
SRP279888GastroGastrodia elata tuber 31.79
JuvenJuvenile tuber19.65
Mother_GastroMother tuber of Gastrodia elata 23.71
Mother_JuvenMother tuber of Juvenile 18.49