Gene detail

Detail information of GWHGAAEX002856/evm.TU.scaffold_127.13

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530780041\|ref\|YP_008431845.1\|	6.00E-15	replication protein C [Thermofilum sp. 1910b]
KOG	KOG1968	2.00E-61	Replication factor C, subunit RFC1 (large subunit)
nr	gi\|743772497\|ref\|XP_010916558.1\|	0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105041329 [Elaeis guineensis]
Swissprot	tr\|Q2R2B4\|RFC1_ORYSJ	8.00E-15	Replication factor C subunit 1
trEMBL	tr\|M0SZE2\|M0SZE2_MUSAM	1.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P17630_001}
TAIR	AT1G77620	2.00E-61	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000141	450048	497431	+

Transcript Sequence
>GWHTAAEX002856 TTCATCAGCATTCTGAAGAATCTGAGGTCTGAACCCTAATACAGTACAATGGATAGAGCCAGCGAACGGAATGTAACTGAGAAGCCCGCCTCCTCAAAGCGGAGTAAGCGATGCATCCAGTCGAAGCTCTCATGGTTTGTCAATGCTGGACTCAACGGAATTTCCATGTCTTCGCCTCCGTCGTCAGAGGCTGCTGCAAAAGTGATTCAAAATGGATCAAAGCTTTCGGAGAAAATTATGGGAGACGGGAAACGCAAGCGAAATAGCCGGAGAAAATCTCTTGATAAGGCTTTCGAAGAGTCTGCAGATTCCTACAAAGAAGAGGTGAGCAATTCCAGGAAGCAAGGAATGCTATTTAAAAGTTGGCCTGATTTTGATGAAGACAGCTGTGTCTCTCTTTCTCCTGCCCATGTATTCGAGGCTTTAAATGTAAATGTTTCTTTGATTGATTGGAGAAACTGGAAATTTATGGAGGAAACCTCAGTAAATTTGAACTCCAGTTATAGTTCAGAAAACTATTCATCTCCTTTGAAATTGAATTGTGCTTGTACAAAGGAGTCAAATTTAGATATATTATTATGGCACGAGAGAACAAGCCCTGCAGTTGGAGAAACAAACCCATCTAAGCTCTCCATTGACCTAGTTTCGAAGGAACACCTATTTCCTCTCTTGGAGATGGTTCGTATGGGCTGCAACTCTGCATTGCCGTCATCTATTATCGCAAATGTGGATATACGAGATCAAAATGAGCTGTGGGAAAGAAGACTGGCTTCATACCATCAACACATTGACTGTTTCCCAGATTGTTGCTTATGGACTGAAAAGTATAGGCCCAAAAATACTTTGGAGGTGTGTGGAAATGCTGAATCGGTCAGGTTTCTCAGTGAGTGGCTCAAATCCTGGCACGATAATAGTTGGGGAAAAAATATAAATTCCATTGTTGCTGAAGATAATAACGGTGCCTCTTACAGCGATGCGCATCGTGTGAATGAAACATGTGGGAATACTGTAAAAAATGTTCTTTTGATTGCAGGGCCCATTGGGAGCGGAAAATCTGCAGCTGTATACGCTTGTGCTAGGGAGCAAGGATATAAAGTGATTGAGATAAATGCATCCAGCTTGAGAAATGGTTCATACTTGAGGCAAACTTTTGGTGAAGCAGTGGATTCACTTGGACTCACGCATTGGTTTGTCAAGGATCAAGTACATCAAGCTGGAGAACATATGTTAGAACTGTTGTCAGACGTACCTGATGTTATGGATAATAAATTTCAAATTGATTTAACAGAAGCAGGTTCAAAGTTTTGTAATCAAATGAATGCTACAGAAAAAAGAAGTGCATCTTGTCAAGTCGCAAATAAAACTCTCCTCCTATTTGAGGAGGTGGATGTTGTGTTTGATGAGGACCGTGGCTTTATGTCTGCCATACTTAAACTTGCTGAAACCACAAAAAGGCCAATCATTCTGACAAGCAATGATAGAAAACCTGTCCATCCACAGATTTTGGATCGACTTAAAGTATTGAACTTCAAATCACCAGCTTGCCACGAATTACTATACTTTGTATCTATGGTTTGTGCTTTTGAGAAGGTTCATGTTTCCTGCAATTTACTTGAGCGCATAGTTAAAGCTTCTTTATGTGACATCCGCAAAATTCTCATGCTACTGCAGTTTTGGTGTCAAGGACCAGGAGATTCTGATCATAGGATTCAATGCACCAAAATTCCTGAGCCCTTAGATATTGAAGCCGTGCACTTGGCACTTCCAAAGGTGATTCCTTGGGATTTTCGGTGCGAATTATCAGAAAAATTGGAAGAAGAGATCAATAAAACACTTTCTGAGGTGGACAAGAATTCTTTGCTTATGGGTCCTGTAATGCAGCACAAGCTCAGCTCACGGGAAATTGTTGATTCCTGGGAGACATGTAAATCCAAAACTGTCAAGCTTCAGAAGGAGAAGAAGAAAGAACTATTGAGGAAGTACTCGTTCCCTGATCCCAAAGTCCTGTCACCTCACATGGAAAAGCACTTGCACTCATTCGACTACTCAAGTTCTACATCGTTTGCTATACAAAGAGCGTTCGGGGAAAAGCATGGCATTGCTTTACCATTATTATCTAATGATGGGCCACCCGCTTTTGAGCCCAAACCTGGAGCTACATTGGCACAGCATAATTGTTTCAACTTGTCTACTTTTCCAAATTCTCTTATTTCTCAAACTCGGATTGAGACCTTTGGCTTGGACTGCAAACTAGAAAATTCGTTCATTAGTTCTGAACGAGCATCAATCTCCCATGTGTGCGACACTTACGGAGTACCGGACATTTCCTGTGTTTTTCAATCTTCTTTAATTCCAGAGGAAGAAACAGACATGAACTCTTCTTTTCAATCAGGTACAGCATCTCTTAAGCAAGAGTTCGCTGGTTTTTGTAACGGATCAGCACCTGTTGCTAATTTAGATAACGGAATTGCTGAGCTAAGCAAATTCTCAGAAAACTATTTTGGCACCAGTGCTGCAGTTTATGCAGAGTCAATTCAAGGAAATGATGATCTTGTTGACTTTCAAAATGCTGCTGTAAAACATCCGTTGTGCCACGCTCTACTCTTGGATGATGAGTGCAGCCGTGCCAGTTTCAATATGTGGTCGGTCCAAAAGGACAGGATTTCACACTCTCAGGAAGCTTCTTCGGTTTCCAAGACGTGGAGAAAACTTCGTAGTTTCCGTGATAAATTCAACTTATTTTTGCCCACCGGCAGCAAAGAAGCTTCTTTCATAACCAGCCTGACTTCCAAACTTGCGGATCTGATATCTGTAGCCGATATTAATTATGGAAGCTGCAATTCCGATCACTGGGGAAGTCTAGGGCCAACCACTCCTTCTAGAGTTGGTGATGATTCTATCGCTTGGTTCGAGAATCAAATAGAGATGGGATCGACGTTTTCTCAACACGGTCTTTGCCTCTACATGAAGGAATGTGCTGCGCTTGGATCATCTTTGGGCTTCAACAATACAGTGAATTTTTGCCATGAGATATTGGCTTCCAGCACTGACAGCATGACTCTGTGTAAGCTCTTTGCATGGGTGAGTTATACTGATCAGAGCTCGTCTCTCAAAGCTATGGACACAAAGTTGCCGCAACCCTATGAGCCTATGGGAAGAGAATCTGTGGATGAGCTTTGCGATATCGTGCTTCGCACAGTTCCTGCAAGGCTGTCCATGGTGACAAGGGGTCTTGCATACCATGAATACTTGTCCTTCATGAAACTTTGGAGAAGGTAAGCCCTAAATACATGCAACAATCATGTCTAGATTTTGTTTCTCTTGCTTTTACCTTCAATAAAGCCTTGGCCCAGAAATATCCAAATGAAAGAAAGATATTACTGTCCAATTAATCGATTCTTTTGAATTTTGAGGAACTGTGAAAGGTTCCTCATGTAATAAAATGATAGGATACGATTATGCATATCAGTTATTTTCAAGAACTTGTTTTCTTGCATGTTGCCTAAATTTTTTAAATGAGAATCACTTGCAC

Network for GWHGAAEX002856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	325	491	2.10E-07

Protein Sequence

>GWHPAAEX002856
MDRASERNVTEKPASSKRSKRCIQSKLSWFVNAGLNGISMSSPPSSEAAAKVIQNGSKLSEKIMGDGKRKRNSRRKSLDKAFEESADSYKEEVSNSRKQGMLFKSWPDFDEDSCVSLSPAHVFEALNVNVSLIDWRNWKFMEETSVNLNSSYSSENYSSPLKLNCACTKESNLDILLWHERTSPAVGETNPSKLSIDLVSKEHLFPLLEMVRMGCNSALPSSIIANVDIRDQNELWERRLASYHQHIDCFPDCCLWTEKYRPKNTLEVCGNAESVRFLSEWLKSWHDNSWGKNINSIVAEDNNGASYSDAHRVNETCGNTVKNVLLIAGPIGSGKSAAVYACAREQGYKVIEINASSLRNGSYLRQTFGEAVDSLGLTHWFVKDQVHQAGEHMLELLSDVPDVMDNKFQIDLTEAGSKFCNQMNATEKRSASCQVANKTLLLFEEVDVVFDEDRGFMSAILKLAETTKRPIILTSNDRKPVHPQILDRLKVLNFKSPACHELLYFVSMVCAFEKVHVSCNLLERIVKASLCDIRKILMLLQFWCQGPGDSDHRIQCTKIPEPLDIEAVHLALPKVIPWDFRCELSEKLEEEINKTLSEVDKNSLLMGPVMQHKLSSREIVDSWETCKSKTVKLQKEKKKELLRKYSFPDPKVLSPHMEKHLHSFDYSSSTSFAIQRAFGEKHGIALPLLSNDGPPAFEPKPGATLAQHNCFNLSTFPNSLISQTRIETFGLDCKLENSFISSERASISHVCDTYGVPDISCVFQSSLIPEEETDMNSSFQSGTASLKQEFAGFCNGSAPVANLDNGIAELSKFSENYFGTSAAVYAESIQGNDDLVDFQNAAVKHPLCHALLLDDECSRASFNMWSVQKDRISHSQEASSVSKTWRKLRSFRDKFNLFLPTGSKEASFITSLTSKLADLISVADINYGSCNSDHWGSLGPTTPSRVGDDSIAWFENQIEMGSTFSQHGLCLYMKECAALGSSLGFNNTVNFCHEILASSTDSMTLCKLFAWVSYTDQSSSLKAMDTKLPQPYEPMGRESVDELCDIVLRTVPARLSMVTRGLAYHEYLSFMKLWRR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.610
SRP064423	SRR2545915	Juvenile tuber	31.130
SRP108465	SRR5643513	five period of Gastrodia elata	15.800
	SRR5643514	five period of Gastrodia elata	16.480
	SRR5643515	five period of Gastrodia elata	15.410
	SRR5643524	five period of Gastrodia elata	16.780
	SRR5643525	five period of Gastrodia elata	8.650
	SRR5643528	five period of Gastrodia elata	6.290
	SRR5643658	five period of Gastrodia elata	8.680
	SRR5643659	five period of Gastrodia elata	13.670
	SRR5643660	five period of Gastrodia elata	16.200
	SRR5643661	five period of Gastrodia elata	12.860
	SRR5643662	five period of Gastrodia elata	13.250
	SRR5643663	five period of Gastrodia elata	15.020
	SRR5643664	five period of Gastrodia elata	14.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.080
SRP279888	Gastro	Gastrodia elata tuber	23.69
	Juven	Juvenile tuber	21.27
	Mother_Gastro	Mother tuber of Gastrodia elata	14.10
	Mother_Juven	Mother tuber of Juvenile	14.87