Gene detail

Detail information of GWHGAAEX002860/evm.TU.scaffold_127.17

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1737	Oxysterol-binding protein
nr	gi\|743801856\|ref\|XP_010926456.1\|	PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L751\|ORP1C_ARATH	Oxysterol-binding protein-related protein 1C
trEMBL	tr\|M0SGI0\|M0SGI0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P21140_001}
TAIR	AT4G08180	OSBP(oxysterol binding protein)-related protein 1C

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000141	585668	603571	+

Transcript Sequence
>GWHTAAEX002860 GCGGATTTCAGGGTTCACTTACAGCTCGAATGATCCCGACATCTGCGGCACTCCTCCTCGCTGCTGCACTCCACTACGTGCGGCTTAGCAATCATTAGCGTCTCTTTCTCTCCAAATGCATCCATTCTGCTGCGCATCGCCGGTTCCAGTCTCCCCCGTCGCCGGCGCGTCGTCCACCTTTCCGCTTCCTCCGGCGCCTCCTCCGCCGCCGGATATGCCTCCACCAAACCGGTCCGATCATCCTCTACCTCTTCTCCAATTCTCTGGACGAAGCGCACCCTCTGCACCAACTGCATCTCCTCCGCACTCCGCAACAACGACCTCCGCTGCCTTCGGAAACGGTTTCAGATGGCCGAGTCTCTCTTCCATCTCAGCCGACTTATCTTCTATGCGCATCGCCATCCACGATGCCACCGAGCTCCGAATCAACGACATCGTTGGCAACGGAATTGCCGGCATCCTGCACAAGTGGGTTAACTACGGTCGCGGATGGCGTCCCCGATGGTTCGTTCTGCAGGACGGCGTCCTCTCCTATTACAAGATCCATGGCCCCGATCGTATCAAGCTCGATGAGGAGGCCGACAAGGGCTCCAAGCTTATTGGCGAGGAATCGCTTCGACGCGTCAAAAGCCATCGCCGTACCGGATCCAACTCTTTCAATTCCATCCACCGCAAACCGATGGGGGAAGTTCATCTTAAGGTGGCGACGGTGAGGGAGAACAAATCGGACGATAGGAGATTCTCGATATTCACGGGAACGAAGAGGCTGCACCTGCGCGCGGAGACGAGGGAGGATCGGGCGGTGTGGATGGACGCTCTGCAGGCCGTGAAAGAAATGTTCCCTCGAATATCTAATTGCGAGCTTATGGCGCCAGTGGATAACTTTGTGGTATCGACCGAAAGGCTGAGACAGAGATTACAAGAAGAAGGGATCAGTGAGGCGGCAATCCAGGATAGTGAGCAGATCATGAGAAGTGAATTCGTAGCATTGCAGGGGCAGCTTGCCATTCTCAAACAGAAACAATTGCTTCTTACTGATACACTTCGACAGCTTGAGACTGAAAAGGTTGATTTGGAGAATACCCTTGTCACCGAAAGTCAAATACAATCAAAAGTGTATGCATCTGCTTCTGCTTCAAGGAATGATAAGGGTAGTGAAGGAAGTATATCAGAATCTGAAGATGATAATGAAAGGCATGATGCTGCAGAAGAAGAGACTGATGATGAAGATAATACTTTTTTTGACACACAAGATTTTCTCTCATCAAGTTCATTTAAGAGCAGCGGGTCTGACTTTCTTAGATCTGAAATTGATTCTGATGAAGAAGAGCATTTTGGTATTGCTATAATTGATGGTTCTGCTCCCTATGTGAATTCCTTCGGATCTAGATATCCATATGTTAGGAGACGAAAAAAGCTTCCTGACCCATCTGAGAAAGAGAAAGGTGTCAGCCTTTGGTCCATGATAAAAGACAACATTGGGAAGGATTTAACCAAAGTTTGCCTTCCTGTCTACTTCAATGAGCCTCTGTCATCATTGCAGAAATGTTTTGAAGATCTTGAGTACTCTTATCTACTTGACCGGGCTTATGAATGGGGTAAAAAGGGAAATGGTCTTATGAGGATGCTTAATGTTGCCGCCTTCGCTCTTTCTGGATATGCATCTACTGAAGGAAGAATCTGCAAGCCTTTTAATCCTCTTTTGGGGGAGACATATGAGGCTGACTATCCAGACAAAGGTGTTCGATTTTTCTCTGAAAAGGTTAGCCATCACCCTATGATTGTTGCTTGCCATTGTGAGGGAACTGGTTGGAAGTTTTGGGGAGACAGTAATCTAAAGAGCAAGTTTTGGGGTCGTTCAATCCAGCTTGATCCTGTTGGCATTCTGACCCTTGAATTTGATGATGGTGAAGTTTTCCAGTGGAGCAAGGTAACAACCTCCATTTATAATTTGATTCTTGGAAAGTTGTATTGTGATCATTATGGTACAATGCGAATACACGGAAATGGTGATTTCTCATGCAAATTGAAGTTCAAAGAGCAATCTATAATTGATCGCAATCCTCACCAGGTTCACGGCACAGTTCAGAATCGGAGTGGGAAAACAGTGGCAACGCTGTTTGGCAAATGGGATGACAGCATGCATTACGTGAATGGAGATCACAGCTCTAAGGGCAGAGGTGCTGAAATCCTCTCTCCGCCCCTTCTCTTATGGAAACGAAGTAAGCCTCCGAAGAATCCGACCCGTTACAACCTTACTCGCTTTGCCATTACACTCAACGAGCTCACTCCTGGCTTGCGGGAACAGCTACCGCCCACTGATTCAAGGCTAAGGCCGGATCAAAGATGCTTGGAGAATGGAGAGTTTGATATGGCAAATGGGGAGAAGTTGAGATTGGAACAGAGGCAACGCCAGGCGCGAAGAATGCAGGAGAGCGGTTGGAAGCCGCGGTGGTTTTCCAAGGACCAAAGCAATGGCACATACAGCTACACAGGCGGCTACTGGGAGGCAAGGGCGGAGGGCCGCTGGAATGACTGCCCCGACATATTTGGCCAAATTCCTGCCAGTAATAATGACCAGCTCGCCGATTGACCTTAGCAATGTTATTCCGACAAGAGAGGCCAAAGTTCTCTGAATGCCGCCGCCCCCTATTCTTTGAACTCCCCCTTTGTATTGAATTTATCCCTCTCCATTGTCTCTCTGTATCCATGCTCGCTATTTTCGAGCAGCAGCGGTGCGGTATGGCTTGTTGTAAACTGTAGAGGCTGTAAATCTGTGAACATTGATTGCTCTTACATAAATAAGAAAAAGTTTTCTTTATAGTTTGTATCTGATAATATATTATTTTTAACCTTATTTATGCAACCACTTATAGCTGAATTCATATTTAGTAACATTACTTAGCTCTGTCCAGCTGTTATTTCAA

Network for GWHGAAEX002860

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15413.5	PH_11	117	237	1.70E-16
PF01237.17	Oxysterol_BP	446	798	5.80E-125

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.660
SRP064423	SRR2545915	Juvenile tuber	39.440
SRP108465	SRR5643513	five period of Gastrodia elata	91.800
	SRR5643514	five period of Gastrodia elata	97.370
	SRR5643515	five period of Gastrodia elata	98.220
	SRR5643524	five period of Gastrodia elata	119.170
	SRR5643525	five period of Gastrodia elata	103.050
	SRR5643528	five period of Gastrodia elata	109.180
	SRR5643658	five period of Gastrodia elata	112.480
	SRR5643659	five period of Gastrodia elata	48.850
	SRR5643660	five period of Gastrodia elata	40.230
	SRR5643661	five period of Gastrodia elata	53.000
	SRR5643662	five period of Gastrodia elata	55.720
	SRR5643663	five period of Gastrodia elata	50.160
	SRR5643664	five period of Gastrodia elata	48.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	69.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	85.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	77.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	71.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	64.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	63.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	77.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	82.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	73.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	73.830
SRP279888	Gastro	Gastrodia elata tuber	36.32
	Juven	Juvenile tuber	85.70
	Mother_Gastro	Mother tuber of Gastrodia elata	146.36
	Mother_Juven	Mother tuber of Juvenile	130.58