Gene detail

Detail information of GWHGAAEX002864/evm.TU.scaffold_127.21

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743772418\|ref\|XP_010916517.1\|	PREDICTED: DELLA protein SLR1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q945J4\|DWRF8_MAIZE	DELLA protein DWARF8
trEMBL	tr\|Q06F06\|Q06F06_MAIZE	Dwarf plant9 {ECO:0000313\|EMBL:ABI84226.1} (Fragment)
TAIR	AT2G01570	GRAS family transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000141	847880	849763	+

Transcript Sequence
>GWHTAAEX002864 ATGAAGAGGGAGCACCTTGACAGCGTCGGCGGAGGGGCGCCGGCGATGATTTCGATGGTTGGAAAGGGGAATCTGATGGGGTTCGATGAAGAGACGGACGCCGGGATGGATGAGCTTCTTGCGGCGCTGGGGTACAAGGTGAGATCCTCCGACATGGCGGATGTTGCGCAGAAGCTGGAGCAGCTGGAGATGGCGATGGGTGGAAGCGCTGCGCAAGATGATGGCCTTCTTGCCCATCTTTCCGTCGAAACCGTGCACTACAATCCTTCGGATCTTTCCAACTGGCTGGAGAGCATGCTGTCCGAGGTCAGCGCGCCTCCTCCGCCGTCTCTTCCTCCGGCGATGCATACTAATTCCGGCGTCTTCGATTTTCCCTCAGGTTCGAGATCCAGCCAGTCGCCCTCTCCCTTTTTCAATATTTCCGAAACCCTAGCCACCACGGACTCCTCCACCGTCACCTCCGTCGAGCTCTCCGCTCAATCTGTCTCCATGATTCCCCATGATTACCCTCTCCGGACTCCCAACCCTGGAGGCAATCGTGCTGCTTACGCATCATCGGAGACTCCGAATCAGACTCATATCGAAAGCTCTGGACAGAGGGATAAGAAACGTATGAGAACCTCGTCCTCGTCTTCGTCCTCATCCAGAACCGGATCTGGTGCTGTGGTCGGTCGCGTCGCTGCTTCCCCCGTCGCGGCGCCCTCTTGCGGAAATGAATCGATGCCGTACGGTCTGCCGGTGGTGATGGTGGATACTCAGGAAGTAGGAATCCGTTTGGTCCACGCTCTCATGGCGTGCGCGGAAGCTGTGCAGCAGCAGAATCTCAAGGCCGCTGACGTTCTCGTTAAGCAGATCCCCGTGCTGGCCTCATCCCAAGGCGGCGCTATGCGGAAGGTCGCCGGATACTTTGCCGAAGCTCTAGCTCGCCGGATCTATCGCTTGAACATGCAGGACTGCGCTCTGGACTCCGCCTTCTCCGATATCCTCCAGATGCACTTCTACGAGAGCTGTCCTTACCTCAAGTTCGCCCACTTCACAGCCAATCAAGCCATTCTGGAGGCCTTCGCAGGCTGCCGCCGCGTCCACGTCATCGATTTTAGCATGAAACAGGGGATGCAGTGGCCGGCGTTGATGCAGGCGCTGGCCCTCCGTCCCGGCGGACCGCCGTCCTTCCGTCTTACAGGAATCGGCCCACCTCAGCCGGACAACACCGACGCCCTGCAGCAAGTCGGCTGGAAGCTCGCCCAACTCGCCGACACCATACACGTCGACTTCGAATACCGCGGCTTCGTAACCAACAGCCTCGCCGATCTGGAGCCCTACATGCTCGAATCTCAGTCTCAGTCCGACGAGCCGGAGGTCATCGCCGTCAACTCCGTTTTCGAGCTCCACCGGCTTTTGGCCCGGCCTGGGGCTCTAGAGAAGGTCCTCGCCACCGTCCGGGCCATGAAGCCGCGGATTGTGACGTTCGTGGAGCAGGAAGCGAACCACAACGCAGGATCGTTCATGGAGAGGTTCACAGAGGCGCTGCACTTCTACTCGACGATGTACGATTCGCTGGAGGGCGCAGCGGAGGGGCAGCAGGACCAGATGATGTCGGAAGTTTATCTCGGAAGGCAGATCTGCAACGTGGTGGCTTGCGAGGGGGCGGAGAGGACGGAGCGCCATGAGACGCTCTCGCAATGGAGAGGAAGGATGGAAGGCGCCGGCTTCGAGCCCGTTCATCTTGGATCCAACGCCTTCAAGCAGGCAAGCATGCTGCTCGCCCTCTTCGCCGGCGGAGAAGGTTACCGCGTGGAGGAGAAGGAAGGTTGTCTTACCCTCGGCTGGCATACGCGCCCCCTCATCGCCACCTCTGCCTGGCGCGTCGCTGATAGTTTATGA

Network for GWHGAAEX002864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12041.7	DELLA	37	107	4.10E-33
PF03514.13	GRAS	259	622	7.90E-138

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
K14494	DELLA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	271.860
SRP064423	SRR2545915	Juvenile tuber	213.890
SRP108465	SRR5643513	five period of Gastrodia elata	248.360
	SRR5643514	five period of Gastrodia elata	229.440
	SRR5643515	five period of Gastrodia elata	169.220
	SRR5643524	five period of Gastrodia elata	192.050
	SRR5643525	five period of Gastrodia elata	200.530
	SRR5643528	five period of Gastrodia elata	147.650
	SRR5643658	five period of Gastrodia elata	155.370
	SRR5643659	five period of Gastrodia elata	380.540
	SRR5643660	five period of Gastrodia elata	507.130
	SRR5643661	five period of Gastrodia elata	437.220
	SRR5643662	five period of Gastrodia elata	362.360
	SRR5643663	five period of Gastrodia elata	279.900
	SRR5643664	five period of Gastrodia elata	319.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	485.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	357.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	396.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	641.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	535.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	731.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	460.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	421.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	274.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	353.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	340.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	340.310
SRP279888	Gastro	Gastrodia elata tuber	182.32
	Juven	Juvenile tuber	263.96
	Mother_Gastro	Mother tuber of Gastrodia elata	120.65
	Mother_Juven	Mother tuber of Juvenile	164.23