Detail information of GWHGAAEX002872/evm.TU.scaffold_127.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|313679800|ref|YP_004057539.1|0aconitase [Oceanithermus profundus DSM 14977]
KOGKOG04520RNA-binding translational regulator IRP (aconitase superfamily)
nrgi|672168597|ref|XP_008804304.1|0PREDICTED: putative aconitate hydratase, cytoplasmic [Phoenix dactylifera]
Swissprottr|Q6YZX6|ACOC_ORYSJ0Putative aconitate hydratase, cytoplasmic
trEMBLtr|M0SUK0|M0SUK0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00710_001}
TAIRAT2G057100aconitase 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014111315581212769+
Transcript Sequence

Network for GWHGAAEX002872

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00330.19Aconitase655683.60E-180
PF00694.18Aconitase_C6978256.60E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01681ACO, acnA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation pathways in prokaryotesmap00720

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms113.580
SRR2545915Juvenile tuber126.080
SRP108465SRR5643513five period of Gastrodia elata144.160
SRR5643514five period of Gastrodia elata136.820
SRR5643515five period of Gastrodia elata161.370
SRR5643524five period of Gastrodia elata152.070
SRR5643525five period of Gastrodia elata101.320
SRR5643528five period of Gastrodia elata133.960
SRR5643658five period of Gastrodia elata96.100
SRR5643659five period of Gastrodia elata96.420
SRR5643660five period of Gastrodia elata81.080
SRR5643661five period of Gastrodia elata94.770
SRR5643662five period of Gastrodia elata72.200
SRR5643663five period of Gastrodia elata91.000
SRR5643664five period of Gastrodia elata64.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1100.280
SRR6049655Rhizomagastrodiae_C368-T10_good_1117.410
SRR6049656Rhizomagastrodiae_C368-T07_good_1108.120
SRR6049657Rhizomagastrodiae_C368-T07_good_186.520
SRR6049658Rhizomagastrodiae_C368-T04_good_187.660
SRR6049659Rhizomagastrodiae_C368-T04_good_190.090
SRR6049660Rhizomagastrodiae_C368-T01_good_187.520
SRR6049661Rhizomagastrodiae_C368-T04_good_195.570
SRR6049662Rhizomagastrodiae_C368-T01_good_1125.630
SRR6049663Rhizomagastrodiae_C368-T01_good_1111.130
SRR6049664Rhizomagastrodiae_C368-T10_good_1141.100
SRR6049665Rhizomagastrodiae_C368-T10_good_1141.100
SRP279888GastroGastrodia elata tuber 107.40
JuvenJuvenile tuber141.34
Mother_GastroMother tuber of Gastrodia elata 230.15
Mother_JuvenMother tuber of Juvenile 231.62