Detail information of GWHGAAEX002874/evm.TU.scaffold_127.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-161 | FOG: PPR repeat |
| nr | gi|695073012|ref|XP_009383655.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O49436|PP327_ARATH | 3.00E-162 | Pentatricopeptide repeat-containing protein At4g20090 |
| trEMBL | tr|M0RSB7|M0RSB7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P14870_001} |
| TAIR | AT4G20090 | 1.00E-161 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000141 | 1224055 | 1226224 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002874
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 109 | 129 | 0.022 |
| PF12854.6 | PPR_1 | 207 | 239 | 7.50E-10 |
| PF12854.6 | PPR_1 | 277 | 309 | 8.80E-10 |
| PF01535.19 | PPR | 320 | 350 | 0.0096 |
| PF01535.19 | PPR | 356 | 385 | 0.14 |
| PF01535.19 | PPR | 390 | 420 | 0.0015 |
| PF13041.5 | PPR_2 | 422 | 471 | 8.70E-15 |
| PF12854.6 | PPR_1 | 488 | 521 | 1.20E-11 |
| PF13041.5 | PPR_2 | 528 | 575 | 1.60E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.670 |
| SRR2545915 | Juvenile tuber | 0.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.350 |
| SRR5643514 | five period of Gastrodia elata | 3.430 | |
| SRR5643515 | five period of Gastrodia elata | 2.820 | |
| SRR5643524 | five period of Gastrodia elata | 3.200 | |
| SRR5643525 | five period of Gastrodia elata | 1.140 | |
| SRR5643528 | five period of Gastrodia elata | 0.620 | |
| SRR5643658 | five period of Gastrodia elata | 0.410 | |
| SRR5643659 | five period of Gastrodia elata | 10.690 | |
| SRR5643660 | five period of Gastrodia elata | 7.970 | |
| SRR5643661 | five period of Gastrodia elata | 7.110 | |
| SRR5643662 | five period of Gastrodia elata | 7.150 | |
| SRR5643663 | five period of Gastrodia elata | 8.160 | |
| SRR5643664 | five period of Gastrodia elata | 5.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.07 |
| Juven | Juvenile tuber | 6.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.49 | |
| Mother_Juven | Mother tuber of Juvenile | 1.74 |