Gene detail

Detail information of GWHGAAEX002880/evm.TU.scaffold_127.42

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2072	Translation initiation factor 3, subunit a (eIF-3a)
nr	gi\|743820528\|ref\|XP_010931804.1\|	PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Elaeis guineensis]
Swissprot	tr\|Q40554\|EIF3A_TOBAC	Eukaryotic translation initiation factor 3 subunit A {ECO:0000255\|HAMAP-Rule:MF_03000}
trEMBL	tr\|M0SH35\|M0SH35_MUSAM	Eukaryotic translation initiation factor 3 subunit A {ECO:0000256\|HAMAP-Rule:MF_03000, ECO:0000256\|SAAS:SAAS00003684}
TAIR	AT4G11420	eukaryotic translation initiation factor 3A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000141	1349079	1367964	-

Transcript Sequence
>GWHTAAEX002880 ATGTCTGCCTTTGCGAAGCCAGAGAATGCTTTGAAGCGAGCTGAGGAGTTAATAAATGTTGGTCAAAAGCAAGCTGCCTTACAGGCCCTCCATGATCTGATCACTTCAAAGCGCTATAGGGCTTGGCAAAAGACATTAGAAAGGATTATGTTTAAATATGTCGAACTCTGTGTCGATATGCGGAAAGGAAGATATGCTAAAGATGGCATTATTCAGTATCGCATTGTGTGCCAACAAGTAAACGTCAGTTCTCTAGAGGAGGTTATAAAATATTTTTTGCAACTTGCCACTGAGAGAGCAGAGCAAGCTCGTAGTCAAGCACTAGCTTTGGAAGATGCATTGGATGTACAAGATTTGGAAGCGGACAAGAGACCAGAAGATTTGATGTTAAGTTACGTAAGTGGTGAGAAAGGAAAGGATAGATCTGATAGGGAGCTTGTGACACCGTGGTTTAAATTTTTGTGGGAGACATACAGAACGGTGCTTGAAATTTTGAGGAACAATTCTAAGTTGGAAGCATTGTATGCTATGACAACACACCGAGCATTTCAGTTCTGCAAGCAATATAAGAGGACAACTGAATTCCGTAGATTGTGTGAGATCATACGGAATCATCTAGCTAATTTGAATAAGTACCGTGATCAAAGGGACAGGCCTGATCTGACAGTTCCGGAAAGTCTGCAACTTTACCTAGATACTAGAGTTGAACAGCTTAAAGTAGCAACAGATCTGGAATTATGGCAGGAAGCTTTCCGTTCAGTTGAGGATATATATGGCTTAATGAGCATGGTGAAAAAGCACCCAAAGCCTTCCATGATGGTTATATACTATGCTAGGCTAACCGAAATATTCCGAGTCTCAGAGAGCCATCTTTACCATGCGTATGCATGGCTTAAACTTTTTACCCTGCAGAAAAGCTACAATAAGAATTTAACCCAAAAAGATTTACAATTGATTGCATCCTCAGTTGTACTGTCTGCACTGTCAGTGGCCCCCTACGATCATCAATATGGTTCTTCTCTTGTGGAAGCTGAAAATGAAAAAGATCGCAACATGCGGATGGCTAGTCTAATTGGTTTTAACATTGATACTAAAAAGGAAGCTAGAGAAGTTCTGTCACGGGAAGCACTCCTTTCAGAAATGTCCTCTAAGGGAGTAATGACATGCGCATCTCAAGATGTGAAGGACCTTTACTGTCTTCTTGAAAATGAATTCTTGCCCCTTGACCTTGCTTCAAAAGTTCAGCCTCTTCTTACAAAAATTACCAAACTTGGGGGAAAGCTTGTGTCAGCTTCTTCTGTTCATGAAGTGCACCTGTCTCAGTATATCCCTGCTTTGGAAAATCTTGCTGCTTTAAGAGTTTTACAACAGGTTTCAAAAGTATACCATTCACTGAAAATTGAGACGCTGTCCAAGATGATTCCATTCTTAAACTTCTCTGCAGTTGAGAAAATTTCAGTTGATGCAGCAAAATATAAATTTGTTGCAATGGACATTGATTACAAGAACGGTGCAGTTACATTTGGTAGTGCGGACATTGAATCTCATGAATTATGTGATCACCTGATGGTCCTGACAGATTCTTTGAATAAAGCAAGAAATCTTATTTATACTCCTTTGAAGAAACAATCGAGGTTACGTGAAAGCCTATACAATTTAACAGACACAGTGGAGAAGGAGCATAAAAGATTACTGGCAAGAAAATCCATTATTGAGAAACGAAAGGAAGAACATGAACGTCAGATGCTTGAAAAGGAAAGGGAAGAAGAATCAAAAAGGCTAAAACTACAGAAGACCTCTGAGGAGGCTGAACATAGGAGACTTGCTGCTGAATATACTCGCAGAGAGGAGCAGAGAATTCGCCGAGAAATTGAAGAAAGAGAGCTTCAAGAAGCTCAGGCATTACTTCTGCAAGCAGACAAAGGGCCCAAAAAAAGGGGTAAAAGAGTTGTGCTTGAGGGGGAGAAGGTTACAAAACAGGCCATAATTGAGATGGCTTTGAACGAACAGCTCAAGGAACGTCTAGAAATGGAGAAGAAACTGCAGAAGCTTGCAAAAACTATGGATTACATGGAAAGAGCAAAGAGGGAGGAAGAGGCTCCATTGATTGAGCAGGCATTTGAGCAGCGTTTGGTGGAGGAAAAAACAATTCATGAACTTGAACAAATGCAAGAGATTGAGCTCAGTAAGCAGCATCACACTGGAGACCTTGAAGAAAAGAATAGGCTAGCACGGGTGCTGGACAGCAAGATTATTATACAGAATAGAATAGAAGCTCGCCGCGAAGCGGAGTACAAACGTATGAAGGAAGAGGGAGAGCACCGCATCAGCCAACAGAAAGCCATGCGAACCCGTGAGAGAGACATTAAGCAGAAGCTTCTCTTCTACATTAAAACGGAGGAAGAGAGGCTAACCAGGATTCGGGACGAGGAAGAGGCTCGAAAGCTTGAAGAGGAAGAGAGACAGAAGAGGGAGGAGGCTGAGCGCAAGGCGAAGCTTGATGAAATTGCAGAAAAGCAGAGGCAAAGAGAGCGGGAACTGGAAGAGAAAGAAAGGCTCAGAAGAGAAGCTCTTCTTGGAAAGAATGTGGAGCCATCGCCGCGGCCATTCGATTCGGTGTCTGGCGCTTGTCCTGCTGAGACGGCAGCAGCTGCCGGCAAGTACGTCCCTCGGTTTCGTCGTGAGGGAGGAGCACCAACAACAGCAGCCGCGGCTGCTCCTGCATCTGCTCCTCCAGCCGAGACTGATAAGTGGCGTGGGCGAGACGATCGCTCACAGCAGTCCGGCGACAGATGGCGCGATGATCGAGACCGCAGACCTTCATTCGGCGGATCGCGATTGCCCTCTTCCTCGTCCTCGTCCACTTGGTCCTCATCAAAAGCCAGGGGATGA

Network for GWHGAAEX002880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01399.26	PCI	373	509	3.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03254	EIF3A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.740
SRP064423	SRR2545915	Juvenile tuber	44.260
SRP108465	SRR5643513	five period of Gastrodia elata	41.650
	SRR5643514	five period of Gastrodia elata	37.470
	SRR5643515	five period of Gastrodia elata	39.870
	SRR5643524	five period of Gastrodia elata	37.380
	SRR5643525	five period of Gastrodia elata	35.100
	SRR5643528	five period of Gastrodia elata	36.690
	SRR5643658	five period of Gastrodia elata	27.110
	SRR5643659	five period of Gastrodia elata	42.890
	SRR5643660	five period of Gastrodia elata	45.760
	SRR5643661	five period of Gastrodia elata	37.900
	SRR5643662	five period of Gastrodia elata	44.650
	SRR5643663	five period of Gastrodia elata	42.020
	SRR5643664	five period of Gastrodia elata	38.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	75.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	83.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	72.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	68.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	74.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.770
SRP279888	Gastro	Gastrodia elata tuber	45.52
	Juven	Juvenile tuber	41.32
	Mother_Gastro	Mother tuber of Gastrodia elata	33.63
	Mother_Juven	Mother tuber of Juvenile	41.65