Detail information of GWHGAAEX002884/evm.TU.scaffold_127.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1865 | 2.00E-138 | Ubiquitin carboxyl-terminal hydrolase |
| nr | gi|743772712|ref|XP_010916668.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FKP5|UBP17_ARATH | 5.00E-139 | Ubiquitin carboxyl-terminal hydrolase 17 |
| trEMBL | tr|G7KBJ7|G7KBJ7_MEDTR | 2.00E-174 | Ubiquitin carboxy-terminal hydrolase {ECO:0000313|EMBL:AES98232.2} |
| TAIR | AT5G65450 | 2.00E-138 | ubiquitin-specific protease 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000141 | 1437020 | 1460159 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002884
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01753.17 | zf-MYND | 85 | 122 | 1.50E-09 |
| PF00443.28 | UCH | 508 | 808 | 1.50E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.680 |
| SRR2545915 | Juvenile tuber | 14.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.990 |
| SRR5643514 | five period of Gastrodia elata | 26.220 | |
| SRR5643515 | five period of Gastrodia elata | 24.460 | |
| SRR5643524 | five period of Gastrodia elata | 23.230 | |
| SRR5643525 | five period of Gastrodia elata | 21.320 | |
| SRR5643528 | five period of Gastrodia elata | 30.010 | |
| SRR5643658 | five period of Gastrodia elata | 23.360 | |
| SRR5643659 | five period of Gastrodia elata | 10.220 | |
| SRR5643660 | five period of Gastrodia elata | 8.630 | |
| SRR5643661 | five period of Gastrodia elata | 9.620 | |
| SRR5643662 | five period of Gastrodia elata | 9.140 | |
| SRR5643663 | five period of Gastrodia elata | 12.980 | |
| SRR5643664 | five period of Gastrodia elata | 10.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.46 |
| Juven | Juvenile tuber | 26.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.60 | |
| Mother_Juven | Mother tuber of Juvenile | 21.90 |