Detail information of GWHGAAEX002887/evm.TU.scaffold_127.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430743587|ref|YP_007202716.1| | 8.00E-15 | WD40 repeat-containing protein [Singulisphaera acidiphila DSM 18658] |
| KOG | KOG0771 | 2.00E-85 | Prolactin regulatory element-binding protein/Protein transport protein SEC12p |
| nr | gi|743801472|ref|XP_010926359.1| | 2.95E-154 | PREDICTED: SEC12-like protein 2 [Elaeis guineensis] |
| Swissprot | tr|Q39221|STLP2_ARATH | 5.00E-86 | SEC12-like protein 2 |
| trEMBL | tr|M0T5S1|M0T5S1_MUSAM | 4.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P10220_001} |
| TAIR | AT2G01470 | 2.00E-85 | SEC12P-like 2 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000141 | 1548909 | 1564439 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002887
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12894.6 | ANAPC4_WD40 | 218 | 293 | 0.00018 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14003 | PREB, SEC12 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.550 |
| SRR2545915 | Juvenile tuber | 28.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.290 |
| SRR5643514 | five period of Gastrodia elata | 40.090 | |
| SRR5643515 | five period of Gastrodia elata | 42.670 | |
| SRR5643524 | five period of Gastrodia elata | 41.680 | |
| SRR5643525 | five period of Gastrodia elata | 39.950 | |
| SRR5643528 | five period of Gastrodia elata | 46.290 | |
| SRR5643658 | five period of Gastrodia elata | 39.250 | |
| SRR5643659 | five period of Gastrodia elata | 41.360 | |
| SRR5643660 | five period of Gastrodia elata | 39.680 | |
| SRR5643661 | five period of Gastrodia elata | 41.790 | |
| SRR5643662 | five period of Gastrodia elata | 44.570 | |
| SRR5643663 | five period of Gastrodia elata | 40.400 | |
| SRR5643664 | five period of Gastrodia elata | 38.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 46.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.05 |
| Juven | Juvenile tuber | 66.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 61.95 | |
| Mother_Juven | Mother tuber of Juvenile | 63.47 |