Gene detail

Detail information of GWHGAAEX002894/evm.TU.scaffold_127.63

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427725864\|ref\|YP_007073141.1\|	4.00E-08	WD40 repeat-containing protein [Leptolyngbya sp. PCC 7376]
KOG	KOG1310	0	WD40 repeat protein
nr	gi\|743801425\|ref\|XP_010926350.1\|	0	PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9AUR8\|COPA1_ORYSJ	3.00E-07	Coatomer subunit alpha-1
trEMBL	tr\|M0TGR7\|M0TGR7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P11790_001}
TAIR	AT5G10940	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000141	2005658	2133630	+

Transcript Sequence
>GWHTAAEX002894 AACTACGGCAATTTTCAGAGCGTTTCGCTCACGAAAGCGAAAGAGAAGACATGGGAGCTCCCAGAAGAGCGGCGAGGAGTGGCGATAAAGGTGTCGAGAAGGGGCCTTAGAGTTAGGGCTTGAAATTTGATGCATATCTACTGGTTGCAATACAATGAGCTCCTGGAGCTACCTCGACGGAAACATTAGCGGCCTCCTGGAGAGCAGGCATATCGACTCTCTCCAGGATGCAAACCGACGGTTACAAATGCATTCATCTCTGGTTCGAAGACTTGCCCTGGATAAAGTCTTGGAGGGTCATCATGGATGTGTTAACGCAATATCTTGGAATTCAAGTGGCTCGTTATTGATTTCTGGATCAGATGATACCCGAGTTAATATATGGAGCTACTCAAACTGTGAACTTATTCACAGCATTGATACTGGTCATTCTGCAAATATATTTTGTACAAAATTTATTCCAGAGACATGTGATGAACTTTTTGTTTCCGGTGCGGGGGATGCAGAGGTTCGCCTTTTCAATATATCTCGTGTAAAAGGAATAACAGGGAAACTGGACATTGGAAGCATCTTGGAACCATTAGCATTTTTCCAGTGCCATTCCAGGCGCGTCAAGAAGTTGTCTGTTGAAGTTGGAAATCCTAATATAGTGTGGAGCGCAAGTGAGGATGGGACTTTAAGGCAACATGATCTAAGGGAATGCTCTACTTGCCCTCCTGCGGGTTCTTCAAACCAAGAATGCCACAATATTCTTCTTGATCTTCGCTGTGGGGAAAAAAAATCTCTAGCAGATCCTCCAAAGCATTGCTTATTATTGAAATCTTGTGACATAAGCACTACAAGGCCTCATCAAATCCTTGTTGGGGGAAGTGATGCTTTTGCTCGATTGTACGACAGAAGAATGCTTTCTTCCTTGAAATCTTGCCTGATGAAAACAAAGCCACCTCCTTGCGTTAGTTATTTCTGTCCAATGCATCTTTCAGAGCATAAGAAGTCCAGCTTGCATTTGACGCATGTTGCATTCAGCCCAAACGGAGATGAATTGCTAATGAGTTACAGTGGAGAGCATGCTTATTTGATGAACATTGACGTTGGTGATCAAGATATCATGCGGTATTTTGTTACGGATGTTTCAAAACTGTTATCCATCAACAGCTATAGAGAAACCGGTTTGCTGCCGCTAAAAACAAGTTCAGGCCAATTCACTGAAGATAAATACCATTTGGGAAGGCTTAAAATGTGCACGCTATTGGTGCAAGCAGCTGCAATAACCTTAGAAGAAGGATCAAATATTTTTCATGGAATTGAAATGTGCAACGAAGTGCTTCATGGAAAAGGTCCTGATATTGGCTATGCAATGCAGCATGAGTGCTTGTGTATTCGAGCAGCTTTACTTCTTAAGAGAAAATGGAAAAATGATGTTTTTATGGCTATAAGGGATTGTAACAATGCTCGAAGCATTAATCCAACATCTTTTAGAGCATATTACTACATGTCTGAAGCGTTAATTCAGTTAAGGAAGCATAATGAAGCATTAGATTTTGCTTTGGCTGCACATGAATTAGATCCAACAAATTCTGAGGTTGCAGATAAGGTGGTAAGCGTAAGGGGTCTTATTGCTGCAGCAGCTTCAGAAAGGAATAAAGAGGACAGTAAGGATTCAACTGGAAGAGCGGCACTTCGTGGAAGATTGAGATCATCGAGTGATGTACTTTTCCGGACTGAATTCAACAGTGAGGGCTCTCTTGATAGTTATGATTATGAGAGGATAGACTCTGACTATGAAGATGAAATGGAAGTTGACTTTGAAACTTCAATATTTGGGAATGAAGGCCATGAAAATGAACCAAATTTTGATCGCAGAAGTTTAAATTTTAGATTTCACAGAAGAGATGATTCAAATAGAGAAAATGGTGATGTTAATGGTTTGCATGGTTCCACAACAGTTCAACCTGAGTGCTCTTATGAGCCTGAAGCTGCTATTGATATGAAACAACGATATGTTGGGCACTGCAATGTTGGCACCGATATTAAACAAGCTAGCTTTCTAGGACAGCAAGGTGAATTTGTAGCAAGTGGTAGTGATGATGGGAGATTGTTCATTTGGGAAAAGAGAACAGGAAGACTTATTAAAGTGCTTCTTGGAGATGAAGCTGTTGTCAACTGTGTCCAGGCCCATCCAAATCATTGTGCAATTGCAACTAGCGGAATCGATAATACAATCAAGATGTGGAGTCCACATGCAGGAGTTCCCTCAATGGTTGCAGGAGGGGTAGTGGGACCTGATTCAGCCGATTTTCTTAGTATCATGGAAAGTAATCAGCACAAGCTGTTGCGTAATCGTGAGGCTTTGTTGCCATTTGAGTTATTGGAGAGATTTAGAATGCATGAGTTTGCTGAAGGAGCTTTACATCCTTTTGAATGTGCTCAGAGCTGATTTTATGTATTCATACTTCTGTCACTGCCATTATTCTCTCCCAAAGGGGCTTTGTTCTGTTAGTGTAACGGATTCGACTTGCGCCTTGAGAGCATTTGTAGAATTTTGCTTCTAAGGAAAAAGGTGGTTAGTTGAAGGTGGGAGAGAATTTTGGCTGCGTAGGATGATGTGATAAGGTGTTTTTGTTGTTTCTGCTACAACTCATCAGACCTCTTTGAGATATGTCTTAGCTGTTTAATAATCAATTAAGTATTTTTATACCTAATTCTTGTTTCTAATCGGCCGGTATTTTGATTTGAGAATTGCGCACTTTGCTGATGCACTAATCTCGAAACAAAAAAACTTCCAAATTAAGAATTGGGTCAGAATATCTTCCCTACAATAATGTATCAAATATTCAAACATTTCGGTCTCCTTTGTGTATATAAAGATTGAAAGAGCAAGGGAAAAATGAAAGCCC

Network for GWHGAAEX002894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	44	78	3.50E-06
PF00400.31	WD40	616	651	0.026
PF00400.31	WD40	660	694	0.077

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.380
SRP064423	SRR2545915	Juvenile tuber	19.100
SRP108465	SRR5643513	five period of Gastrodia elata	11.700
	SRR5643514	five period of Gastrodia elata	12.410
	SRR5643515	five period of Gastrodia elata	11.080
	SRR5643524	five period of Gastrodia elata	11.870
	SRR5643525	five period of Gastrodia elata	3.290
	SRR5643528	five period of Gastrodia elata	1.660
	SRR5643658	five period of Gastrodia elata	2.340
	SRR5643659	five period of Gastrodia elata	17.280
	SRR5643660	five period of Gastrodia elata	18.910
	SRR5643661	five period of Gastrodia elata	17.780
	SRR5643662	five period of Gastrodia elata	27.230
	SRR5643663	five period of Gastrodia elata	22.800
	SRR5643664	five period of Gastrodia elata	26.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.950
SRP279888	Gastro	Gastrodia elata tuber	31.11
	Juven	Juvenile tuber	17.68
	Mother_Gastro	Mother tuber of Gastrodia elata	14.58
	Mother_Juven	Mother tuber of Juvenile	16.72