Gene detail

Detail information of GWHGAAEX002896/evm.TU.scaffold_127.65

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1947	Leucine rich repeat proteins, some proteins contain F-box
nr	gi\|743859235\|ref\|XP_010942647.1\|	PREDICTED: transport inhibitor response 1-like protein [Elaeis guineensis]
Swissprot	tr\|Q9LTX2\|TIR1L_ARATH	Transport inhibitor response 1-like protein
trEMBL	tr\|A5AZ08\|A5AZ08_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80598.1}
TAIR	AT5G49980	auxin F-box protein 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000141	2287805	2290691	-

Transcript Sequence
>GWHTAAEX002896 GGTAAATTAAAAAAATAAAGCATATTCATTATATATATTTTTGTCCTTATAATTTATTTTAATTTTAGATCATATTATTATTTTCTTATTCTCTTTCAGATCTCTGTATAACTGGTCTCTATCATAAAAAAAAACCAAGAATCTCTGCATTACTTTTTCATCGAGTGGCCGGCCTGGCTCTCTCCCCCCACCCCCACCTCTCTCTCTCTCCCCGGGATTTTAAACTTCCTTTCCTTCCTAGCTCCCAACTCTCTTCTCCTTGAGATGAGAGAGGAGCACAAGTTCCTGATGTCAGAAAACGGCGACTGCGATGACGACGATCGATGGTCCTTAAATCCAAAGTCTCGCTCCTCCGTTACAGCCGCCTCTCTTCCTCCTCCTCCTCCGTTCTCCGATCAAGTCCTGGAGAACGTGCTGGAGAACGTTCTGTGCTTTCTGACCTCCCGTCGTGACCGCAACGCCGCCTCCCTCGTCTGCAAGTCGTGGTACCGCGCTGAGGCCCAGACTCGGCTCGAGCTCTTCATCGGCAACTGCTATGCCGTCAGCCCCGCCCGCGCCATCGATCGTTTTCGGCACATTCGTTCTCTGGTTCTCAAGGGAAAGCCCCGGTTCGCTGATTTCAACCTGGTCCCGCCGGGTTGGGGCGCTGGATTCTCCCCTTGGGTTTCCACCATGGCCTCCGCTTATCCTTGCCTCCAGCGGATCTGCCTCAAGCGAATGACTGTTTCAGATGCCGATCTGGTGACCCTTTCGAGCTCTTTCCCATCTTTTCGCGACCTTAACCTCATCTGCTGCGACGGATTCACCACCGCTGGCCTCGCCGCCATCGCAGAGAAGTGCAGGCATCTCCGATCTCTAGATCTGATAGAGAATGACGTTGAGGACGACGATGAAGAGGTGGTGGATTGGGTGTCGAGGTTTCCGCCTGGGAAGACTTGCCTCGAATCGCTGGTATTCGACTGCGTGGGCTGCGCGGTGAACTTCGAAGCACTGGAAGCCCTTGTGTCCCGCTCGCCCTCTCTATGGAGGCTGAGAGTCAACGAGCACGTATCCATCGAACAGCTCTTCCGGCTCATGGCTCGAGCGCCGCAGCTCACCCACCTCGGCACCGGCTCCTTTTCCGTTCAAGGCGAGGGGGACATCGCGCCCGCCATCTTTCTTGAGTCCGCCTTCATGGCTTCCAAATCCCTGGTATGCCTCTCAGGCTTTCGAGATCTGGCTCCCGAGCACCTGCCCTCGATTTATCCAGTCTGCTCCAATCTCACCTCCCTCAACCTGAGCTACGCCCAGATCAGCACTGATGAGCTCAAGCCTGTCATCACCCGCTGCCACAATCTTCAAACATTCTGGGTTCTAGACTCTGTGCGCGACGAGGGGCTTGAGATGGTCGCAGCGACCTGCAAGAAGCTGAGGGAGCTGAGGGTGTTTCCTCTGGACGCGACGGAGGATTCCGAGGGCTCGGTTTCTGATGTTGGATTGGTAGCGATCTCGGAAGGCTGCAGAAAGCTGGAATCCATCCTGTATTTCTGCCAGAGCATGACGAACGCTGCCGTCGTTGCCATGTCCAAGAACTGCCAAGATCTGCTGGTCTTCCGCCTCTGCATCATGGGCCGGCATCGCCCCGATCACCTTACGGGAGAACCCATGGACGAAGGATTCGGCGCCATAGTCAAGAACTGCAGGAAGCTCACCAGGCTCGCTGTTTCCGGCCTCCTTACGGACAAAGCCTTCGCCTACATCGGCAAGTACGGGAAGCTAGTGAGGACGCTCTCGGTGGCTTTTGCAGGGAACAGCGATCTGAGCTTAAGGTACGTTCTCGAGGGGTGCCCTAATCTTCAGAAGCTCGAGATTAGGGACAGCCCCTTCGGAGACGCAGGCTTGCTCTCTGGGGTCCACCATTACTACAACATGAGGTTCCTGTGGATGTCTTCTTGCAAGATTTCTGTGAAAGGATGCAAGGAAGTCGCGCGCAGATTGCCTCGCATGGCGGTGGAAGTGATCAGGGAAAGACCGGAGGAGGATTGCAATAACAGCCTTCCGGTGGAGAAATTATACATGTATCGATCGCTCGCCGGCCCTAGGAACGATGCTCCGCCTTTCGTTAAGATGTTGCAGGCTTGCAGCTCCCACTGATATTCAGAAAGGAACGTCAATATATCATGAAAATAATCTTTGAATATGTGTTGAGATTAGTGTGAAATACATTGTCCTTTTTTATTATTATACTGATTTCAAAACAGTTTGAAGACCTCTGTCATCATGATGTTCTGATTCATCTCTCTCACAAATGGAGATTTCTCCAGATTGAATTTGGTGCGGAGTTTCCACAGCCCACCAGAAATGTCTTTTTATTGATTTTTCTATTTATTTTAATCCCGGTGGAAATTCGCATATAATTTGCTATGCGGGAGATCTTCATATTAGTTAAAAATTCCAAGGCTGGTGCGGCGCGCACACCGTAACTTGTTGTTGACCGGGAGGGGAGCCTTGCCTTTTTTATTTATTTATTTTTTTTATAATTTCTTTCTTACAATCTTGTCCTGGCGCTTGTGCAGGACCTTGTTGGTTTCCATTTTCTATGTTTCATTCTTTTGGAACTTAAGAGCAGTGCCTCCAAGTAATTGCTGGAAAGCCAATAATAGGACTTTACTTTGGAAACGTTTCATATGATGAGCTTCTCTCTGGCTTTTGCCATTTCTGGTTATTTTATTCGCA

Network for GWHGAAEX002896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13516.5	LRR_6	330	345	0.78

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	125.400
SRP064423	SRR2545915	Juvenile tuber	116.670
SRP108465	SRR5643513	five period of Gastrodia elata	81.210
	SRR5643514	five period of Gastrodia elata	62.140
	SRR5643515	five period of Gastrodia elata	42.520
	SRR5643524	five period of Gastrodia elata	46.070
	SRR5643525	five period of Gastrodia elata	119.320
	SRR5643528	five period of Gastrodia elata	86.230
	SRR5643658	five period of Gastrodia elata	159.610
	SRR5643659	five period of Gastrodia elata	92.370
	SRR5643660	five period of Gastrodia elata	151.270
	SRR5643661	five period of Gastrodia elata	122.080
	SRR5643662	five period of Gastrodia elata	159.510
	SRR5643663	five period of Gastrodia elata	170.280
	SRR5643664	five period of Gastrodia elata	184.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	170.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	124.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	128.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	210.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	278.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	325.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	185.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	214.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	71.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	110.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	80.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	80.040
SRP279888	Gastro	Gastrodia elata tuber	181.95
	Juven	Juvenile tuber	79.48
	Mother_Gastro	Mother tuber of Gastrodia elata	91.27
	Mother_Juven	Mother tuber of Juvenile	77.20