Detail information of GWHGAAEX002901/evm.TU.scaffold_127.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30574.00E-50Cytochrome c oxidase, subunit VIb/COX12
nrgi|685330596|ref|XP_009103236.1|5.21E-51PREDICTED: cytochrome c oxidase subunit 6b-1-like [Brassica rapa]
Swissprottr|Q9S7L9|CX6B1_ARATH1.00E-50Cytochrome c oxidase subunit 6b-1
trEMBLtr|A0A078IBE5|A0A078IBE5_BRANA3.00E-50BnaA07g10470D protein {ECO:0000313|EMBL:CDY46649.1}
TAIRAT1G224504.00E-50cytochrome C oxidase 6B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014124134182465150+
Transcript Sequence

Network for GWHGAAEX002901

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02297.16COX6B641202.40E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02267COX6B Metabolic pathways map01100
Oxidative phosphorylationmap00190
Cardiac muscle contractionmap04260
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005739Cellular Componentmitochondrion

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.800
SRR2545915Juvenile tuber96.880
SRP108465SRR5643513five period of Gastrodia elata119.620
SRR5643514five period of Gastrodia elata144.560
SRR5643515five period of Gastrodia elata124.360
SRR5643524five period of Gastrodia elata144.280
SRR5643525five period of Gastrodia elata82.310
SRR5643528five period of Gastrodia elata71.240
SRR5643658five period of Gastrodia elata87.060
SRR5643659five period of Gastrodia elata104.340
SRR5643660five period of Gastrodia elata91.760
SRR5643661five period of Gastrodia elata99.190
SRR5643662five period of Gastrodia elata98.350
SRR5643663five period of Gastrodia elata100.730
SRR5643664five period of Gastrodia elata92.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_192.300
SRR6049655Rhizomagastrodiae_C368-T10_good_1178.040
SRR6049656Rhizomagastrodiae_C368-T07_good_192.290
SRR6049657Rhizomagastrodiae_C368-T07_good_178.780
SRR6049658Rhizomagastrodiae_C368-T04_good_178.200
SRR6049659Rhizomagastrodiae_C368-T04_good_187.830
SRR6049660Rhizomagastrodiae_C368-T01_good_176.410
SRR6049661Rhizomagastrodiae_C368-T04_good_193.520
SRR6049662Rhizomagastrodiae_C368-T01_good_199.250
SRR6049663Rhizomagastrodiae_C368-T01_good_195.780
SRR6049664Rhizomagastrodiae_C368-T10_good_1125.340
SRR6049665Rhizomagastrodiae_C368-T10_good_1125.340
SRP279888GastroGastrodia elata tuber 175.68
JuvenJuvenile tuber139.66
Mother_GastroMother tuber of Gastrodia elata 133.26
Mother_JuvenMother tuber of Juvenile 133.69