Detail information of GWHGAAEX002908/evm.TU.scaffold_127.80


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743773657|ref|XP_010917179.1|1.21E-69PREDICTED: growth-regulating factor 1-like [Elaeis guineensis]
Swissprottr|Q6AWY8|GRF1_ORYSJ7.00E-63Growth-regulating factor 1
trEMBLtr|J3LHM0|J3LHM0_ORYBR2.00E-64Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G41370.1}
TAIRAT3G139608.00E-48growth-regulating factor 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014127753672776334+
Transcript Sequence

Network for GWHGAAEX002908

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08880.10QLQ13465.90E-16
PF08879.9WRC831256.00E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005524Molecular FunctionATP binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.850
SRR2545915Juvenile tuber11.640
SRP108465SRR5643513five period of Gastrodia elata11.480
SRR5643514five period of Gastrodia elata11.680
SRR5643515five period of Gastrodia elata4.400
SRR5643524five period of Gastrodia elata10.750
SRR5643525five period of Gastrodia elata2.200
SRR5643528five period of Gastrodia elata2.330
SRR5643658five period of Gastrodia elata0.410
SRR5643659five period of Gastrodia elata7.790
SRR5643660five period of Gastrodia elata4.090
SRR5643661five period of Gastrodia elata6.460
SRR5643662five period of Gastrodia elata2.910
SRR5643663five period of Gastrodia elata2.570
SRR5643664five period of Gastrodia elata5.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.410
SRR6049655Rhizomagastrodiae_C368-T10_good_17.070
SRR6049656Rhizomagastrodiae_C368-T07_good_17.320
SRR6049657Rhizomagastrodiae_C368-T07_good_17.030
SRR6049658Rhizomagastrodiae_C368-T04_good_14.810
SRR6049659Rhizomagastrodiae_C368-T04_good_16.090
SRR6049660Rhizomagastrodiae_C368-T01_good_13.270
SRR6049661Rhizomagastrodiae_C368-T04_good_15.430
SRR6049662Rhizomagastrodiae_C368-T01_good_110.300
SRR6049663Rhizomagastrodiae_C368-T01_good_13.630
SRR6049664Rhizomagastrodiae_C368-T10_good_17.900
SRR6049665Rhizomagastrodiae_C368-T10_good_17.900
SRP279888GastroGastrodia elata tuber 2.10
JuvenJuvenile tuber4.30
Mother_GastroMother tuber of Gastrodia elata 8.13
Mother_JuvenMother tuber of Juvenile 6.81