Detail information of GWHGAAEX002909/evm.TU.scaffold_127.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1383 | 1.00E-92 | Glutamate decarboxylase/sphingosine phosphate lyase |
| nr | gi|672185308|ref|XP_008812785.1| | 5.18E-116 | PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q6NPF4|MD20A_ARATH | 5.00E-102 | Mediator of RNA polymerase II transcription subunit 20a |
| trEMBL | tr|A0A061GT48|A0A061GT48_THECC | 9.00E-112 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex {ECO:0000313|EMBL:EOY30294.1} |
| TAIR | AT4G09070 | 1.00E-92 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000141 | 2796997 | 2814400 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002909
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08612.10 | Med20 | 1 | 207 | 2.40E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.310 |
| SRR2545915 | Juvenile tuber | 5.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.420 |
| SRR5643514 | five period of Gastrodia elata | 9.170 | |
| SRR5643515 | five period of Gastrodia elata | 8.730 | |
| SRR5643524 | five period of Gastrodia elata | 8.240 | |
| SRR5643525 | five period of Gastrodia elata | 13.000 | |
| SRR5643528 | five period of Gastrodia elata | 8.410 | |
| SRR5643658 | five period of Gastrodia elata | 14.430 | |
| SRR5643659 | five period of Gastrodia elata | 6.960 | |
| SRR5643660 | five period of Gastrodia elata | 6.790 | |
| SRR5643661 | five period of Gastrodia elata | 7.780 | |
| SRR5643662 | five period of Gastrodia elata | 8.890 | |
| SRR5643663 | five period of Gastrodia elata | 7.490 | |
| SRR5643664 | five period of Gastrodia elata | 8.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.84 |
| Juven | Juvenile tuber | 5.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.37 | |
| Mother_Juven | Mother tuber of Juvenile | 2.71 |